Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00429
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    29   2.9  
AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical ...    29   2.9  
AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical...    29   3.9  
AL021497-19|CAA16406.2|  989|Caenorhabditis elegans Hypothetical...    29   3.9  
AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical ...    29   3.9  
U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine rece...    29   5.1  
AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical...    29   5.1  
Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical...    28   8.9  
AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical ...    28   8.9  
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    28   8.9  

>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
           protein C56C10.12 protein.
          Length = 1599

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = +1

Query: 289 MFENILSALNDENEDVKCENLMDFINCLNRLQNNYEPIVIVFDRVERLRNMDQNLLPVLL 468
           M+ +I +   +E+  +  ENL+ F +  N L  + E  V  F + E +     +L P+L 
Sbjct: 200 MYPSIKTYERNEHGLMTEENLVTFYH--NPLYEHAEMFVDQFIKTEEVPTQSGSLFPLLA 257

Query: 469 KLREFCKL 492
           +LR  C L
Sbjct: 258 RLRTVCDL 265


>AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical
           protein F40G9.9 protein.
          Length = 862

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 253 IVDCIECYSSKIMFENILSALNDENEDVKCENLMDFINC-LNRLQNNYEPIVIVFDRVER 429
           ++ C+E + S   F+N+ S L    +    E  M +     N   ++  P   VFD  E+
Sbjct: 221 VIHCLELWQSGAAFQNLESLLIRTEKGYPLEPAMIYNQLDANPWDSDRRPQYYVFD--EK 278

Query: 430 LRNMDQNLLPVLLKLREF 483
           ++ +    LPVL++ R F
Sbjct: 279 MKKLHLVKLPVLVQKRIF 296


>AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical
           protein Y51A2D.7b protein.
          Length = 1057

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 2   GTSQTRTYVIELNNTKAVNKINYIKMDEIYSKVVCRENQLNDLFNLFGDDNEP 160
           G  Q RTYVIE+++ K V       ++ I ++   +   ++D+FN       P
Sbjct: 236 GAEQFRTYVIEISSRKTVQTGGPAVLNIIQTEYEHKFRAISDVFNFLMQKRNP 288


>AL021497-19|CAA16406.2|  989|Caenorhabditis elegans Hypothetical
           protein Y51A2D.7a protein.
          Length = 989

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 2   GTSQTRTYVIELNNTKAVNKINYIKMDEIYSKVVCRENQLNDLFNLFGDDNEP 160
           G  Q RTYVIE+++ K V       ++ I ++   +   ++D+FN       P
Sbjct: 236 GAEQFRTYVIEISSRKTVQTGGPAVLNIIQTEYEHKFRAISDVFNFLMQKRNP 288


>AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical
           protein Y51A2B.6 protein.
          Length = 781

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +1

Query: 337 KCENLMDFINCLNRLQNNYEPIVIVFDRVERLRNMD----QNLLPVLLKLREFCK 489
           K +N +  I CL +L+ + E    V   ++++RN+D    QN+  +   + EF K
Sbjct: 538 KVDNELSVIKCLQQLKQDSEHFQKVIQVIQKMRNLDKDSVQNIQGIPSVVSEFLK 592


>U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 32 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 501 HDMVTHLIFENF-NFKFGVREPIKLYFPNYNKEELFRIIFLYQKSFVQHLLN 653
           H ++  L++ N  N  + + E   LY      + +  I+F  ++ FVQH+LN
Sbjct: 65  HLLIASLVYGNVHNASYTIIETWSLYRSFAYSDNMTAIMFTSEECFVQHVLN 116


>AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical
           protein C24H12.11 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +3

Query: 546 FGVREPIKLYFPNYNKEELFRIIFLYQKSFVQHL---LNHFDIEDETTELIEKPELFANF 716
           + V   I  Y  NY K   F +I       + HL   LN+  + D     I+  +LF NF
Sbjct: 126 YDVNHYINFYCTNYKKVSKFPVIPFKTSQELTHLLDILNNSFLIDHVNLAIDHDQLFGNF 185

Query: 717 LNA 725
            +A
Sbjct: 186 QSA 188


>Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical
           protein M162.7 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 337 KCENLMDFINCLNRLQNNYEPIVIVFDRVERLRNMD 444
           K +N +  I C  +L+ + E +  V   ++++RN+D
Sbjct: 441 KVDNELSVIKCFQQLEQDSEDLQKVIQVIQKMRNLD 476


>AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical
           protein Y116A8C.33 protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +1

Query: 274 YSSKIMFENILSALNDENEDV----KCENLMDFINCLNRLQNNYEPIVIVFDRVERLRNM 441
           Y    +F+N+  A+ ++ +      K  + ++  NCL +L+NN E ++ +   ++     
Sbjct: 467 YKEIFIFQNLSKAIEEKLKSQEFKDKISSELEVHNCLKKLKNNSEAVIRMVPLIQAFMRA 526

Query: 442 D-QNLLPVLLKLREF 483
           D QN+  +   + +F
Sbjct: 527 DLQNVQQIAPLVSKF 541


>AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical
           protein F52G3.3 protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +2

Query: 41  NTKAVNKINY-IKMDEIYSKVVCRENQLNDLFNLFGDDNEPLPCSIFISGSMATGKTLCL 217
           N   + K +Y ++ +  Y K+   + +  D     G         +F+ G   TGKT C 
Sbjct: 301 NIDLITKTDYELRSNSQYKKLNANQKKFVDRALELGPIGRNTTRLLFVDGPGGTGKTFCY 360

Query: 218 QTVLNYLSYK 247
            T+  Y ++K
Sbjct: 361 TTI--YFAFK 368


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
           protein W03F11.4 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 292 FENILSALNDENEDVKCENLMDFINCLNRLQNNYEPIVI-VFDRVERLRNMDQNLL 456
           FEN L  +++    V  ++  +F +CLN +    EP+V    D +++++N+ ++ L
Sbjct: 550 FENNLPEIDEHYRTVN-QSDSEFFDCLNNITEK-EPVVSNALDVIQKIKNVSKSTL 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,661,003
Number of Sequences: 27780
Number of extensions: 343370
Number of successful extensions: 901
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)