Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00429
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34750.1 68415.m04267 RNA polymerase I specific transcription...    31   1.2  
At4g29910.1 68417.m04256 origin recognition complex subunit 5-re...    30   1.5  
At1g63780.1 68414.m07218 brix domain-containing protein contains...    29   3.6  
At4g15233.1 68417.m02334 ABC transporter family protein similar ...    29   4.7  
At3g43300.1 68416.m04570 guanine nucleotide exchange family prot...    28   6.2  
At4g23880.1 68417.m03433 expressed protein                             28   8.3  
At1g14880.1 68414.m01779 expressed protein similar to PGPS/D12 [...    28   8.3  

>At2g34750.1 68415.m04267 RNA polymerase I specific transcription
           initiation factor RRN3 family protein contains Pfam
           PF05327: RNA polymerase I specific transcription
           initiation factor RRN3;  similar to RRN3 (GI:7670100)
           [Homo sapiens] similar to RNA polymerase I specific
           transcription initiation factor RRN3 (Swiss-Prot:P36070)
           [Saccharomyces cerevisiae]
          Length = 613

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 146 DDNEPLPCSIFISGSMATGKTLC--LQTVLNYLSYKHVLSTVSSVIRQR*CSRTFCLPST 319
           DD  P    IF SG  A    LC  ++++L+   ++  L+ + S++  +      CLPS 
Sbjct: 415 DDTRPEAHQIFFSGCQAIMYVLCFRMRSILDVPRFRSQLTPLESILMHKLNPLMVCLPSV 474

Query: 320 M 322
           +
Sbjct: 475 V 475


>At4g29910.1 68417.m04256 origin recognition complex subunit
           5-related (ORC5) contains weak similarity to Origin
           recognition complex subunit 5 (Swiss-Prot:Q9WUV0) [Mus
           musculus]
          Length = 534

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 549 GVREPIKLYFPNYNKEELFRIIFL 620
           G  +PI LYFP Y++E+L R IFL
Sbjct: 238 GYTDPIPLYFPEYSEEDL-RQIFL 260



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
 Frame = +1

Query: 262 CIECYSSKIMFENILS--------ALNDENEDVKCENLMDFINCL 372
           C  CY+ +I+FE+IL+        +LN  +   +C+   DF+N L
Sbjct: 109 CRTCYNPRILFESILNQSLLHRKCSLNGYSSAKRCDKPSDFVNLL 153


>At1g63780.1 68414.m07218 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 294

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
 Frame = +3

Query: 489 IEHLHDMVTHLIFENFNFKFGVR--EPIKLYFPNYNKEELFRIIFLYQKSFVQHLLNHFD 662
           I  + +   HLIF NF  + G R    +K  FP    +    + F  Q  ++    + +D
Sbjct: 179 IGKMPEQYPHLIFNNFTTQMGQRVGNILKHIFPAPKLDAKRIVTFSNQSDYISFRNHVYD 238

Query: 663 IEDETTELIEKPELFANFLNAFLSVSIGHVE 755
             +   + IE  E+   F      V +G VE
Sbjct: 239 KGEGGPKSIELKEIGPRFELRLYQVKLGTVE 269


>At4g15233.1 68417.m02334 ABC transporter family protein similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, PDR5-like ABC transporter
            [Spirodela polyrhiza] GI:1514643; contains Pfam profile
            PF00005: ABC transporter
          Length = 1168

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = +2

Query: 8    SQTRTYVIELNNTKAVNKINYIKMDEIYSKVVCRENQLNDLFNLFG 145
            S   T+++++ +  + +K+  + + ++Y +    +N   DLFN+FG
Sbjct: 970  SNPATWILDITSKSSEDKLG-VDLAQMYEESTLFKNNQQDLFNVFG 1014


>At3g43300.1 68416.m04570 guanine nucleotide exchange family protein
            similar to SP|Q9Y6D5 Brefeldin A-inhibited guanine
            nucleotide-exchange protein 2 {Homo sapiens}; contains
            Pfam profile PF01369: Sec7 domain
          Length = 1756

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 292  FENILSALNDENEDVKCENLMDFINCLNRLQNNYEPIVIVFDRVERLRNMDQNLLPVLL 468
            FEN+   + +  + V  +  MD +NCL R  NN     I    +  LR  +  L   L+
Sbjct: 1168 FENVEQVILEHFDQVIGDCFMDCVNCLIRFANNKASDRISLKAIALLRICEDRLAEGLI 1226


>At4g23880.1 68417.m03433 expressed protein 
          Length = 199

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 411 IR*SRKTTQHGSEPLASASKA*RIL*IEHLHDMVTHL 521
           +R   K T+H ++ L S  K   +L +EHL D + H+
Sbjct: 134 VRVKIKMTKHEAQRLLSKCKNDSVLKLEHLMDQIAHV 170


>At1g14880.1 68414.m01779 expressed protein similar to PGPS/D12
           [Petunia x hybrida] GI:4105794; contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 151

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 517 CVTISCKCSIYKIL*ALEALARGSDPCCVVFRLYRI 410
           C+T+ C C  +  +   E + RGS  CC    LY +
Sbjct: 30  CITLCCPCITFGQV--AEIVDRGSKSCCAAGALYML 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,097,392
Number of Sequences: 28952
Number of extensions: 292268
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)