Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00428
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    35   0.076
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     32   0.41 
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936...    31   0.71 
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    30   1.6  
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           29   2.9  
04_03_0995 + 21521877-21521977,21522152-21522217,21523630-215236...    28   8.7  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +3

Query: 627 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFE 728
           +ALKA + V  G   K  +KIR SV F RPKT +
Sbjct: 26  QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLK 59


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 627 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFE 728
           +ALK  + V  G   ++ +KIR SV F RPKT +
Sbjct: 16  QALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLK 49


>06_01_1133 +
           9364842-9364850,9364929-9365048,9365157-9365476,
           9366267-9366428,9367151-9367235,9367352-9367501,
           9367588-9367635,9367705-9367773,9367897-9368600,
           9369426-9369561,9369636-9369856,9370355-9370486,
           9371316-9371406,9371878-9371925,9372004-9372132,
           9372357-9372626
          Length = 897

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 142 CVSQNTGTCPESSCACPEISCACPETSCACPESSC 246
           C     GTC E  C CP++ C      C C +S C
Sbjct: 661 CPCLTNGTCCEKYCGCPKM-CKNRFRGCHCAKSQC 694


>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 142 CVSQNTGTCPESSCACPEISCACPETSCACPESSC 246
           C     GTC E  C C + SC      C C +S C
Sbjct: 464 CACVENGTCCEKYCGCSK-SCKNRFRGCHCAKSQC 497


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 145 VSQNTGTCPESSCACPEISCACPETSCA 228
           ++++  TCP + C CPE  C     S A
Sbjct: 116 ITEHEKTCPHAPCFCPEPGCGFAAASAA 143


>04_03_0995 +
           21521877-21521977,21522152-21522217,21523630-21523696,
           21523959-21524041,21524318-21524359,21524614-21524733,
           21524806-21524869,21525028-21525113,21525217-21525299,
           21525994-21526070,21526549-21526567,21526568-21526661,
           21527042-21527087
          Length = 315

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 707 EMHRVANFPY-SLPM-FTFYNLPLSLKCFSNRFHYFFLSLNPSLFGLRCNLQFGNCWLGF 534
           E+  +   PY   PM F   +L  +  CF  ++++F +SLN  L     N  F   + GF
Sbjct: 181 EVSVIGYIPYFGKPMNFLLLSLMYAYYCFEYKWNFFAVSLNERLDFFESNWAF---FAGF 237

Query: 533 GS 528
           GS
Sbjct: 238 GS 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,158,567
Number of Sequences: 37544
Number of extensions: 138639
Number of successful extensions: 501
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)