Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00428
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.025
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)              29   2.9  
SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  29   5.1  
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)                 28   6.7  
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_50568| Best HMM Match : EGF (HMM E-Value=0)                         28   8.9  
SB_7889| Best HMM Match : VWC (HMM E-Value=2.6)                        28   8.9  

>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +3

Query: 627 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKT 722
           KA KA++ V KG    + +K+R SV F RPKT
Sbjct: 138 KAQKAKKAVQKGVRAAKTKKVRTSVKFHRPKT 169


>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 139 TCVSQNTGTCPESSCACPEISCACPETSCACPESS 243
           T     T   P+++ A PE + A PE + A PE++
Sbjct: 33  TAAPDATTAAPDATTAAPEATTAAPEATTAAPEAT 67



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 139 TCVSQNTGTCPESSCACPEISCACPETSCACPESS 243
           T     T   P+++ A P+ + A PE + A PE++
Sbjct: 26  TAAPMETTAAPDATTAAPDATTAAPEATTAAPEAT 60



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 139 TCVSQNTGTCPESSCACPEISCACPETSCACP 234
           T     T   PE++ A PE + A PE + A P
Sbjct: 40  TAAPDATTAAPEATTAAPEATTAAPEATTAAP 71


>SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 509 CGNSSQNCQTQASSFQIEDCTEAQKDWD*GTKKSSETCY*ST*GSEEGCK 658
           CGN + NC  +A +   E  +    DW       +ETC      SEE C+
Sbjct: 129 CGNGTSNCNCEACTDFSEVISAELYDW----VPQNETCVVKNYSSEEACR 174


>SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 142 CVSQNTGTCPESSCACPEISCACPETSC 225
           CVS      P  + ACP ++ AC   SC
Sbjct: 80  CVSYRYDRVPYLTSACPNVTSACQRVSC 107


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 142  CVSQNTGTCPESSCACPEISCACPETSCACPESS 243
            C+  N   C + +  C   S  CP+ S  CP+S+
Sbjct: 998  CLKDNV-MCSKDAVTCQNRSVTCPKYSVLCPDSN 1030



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 148  SQNTGTCPESSCACPEISCACPETSCACPESS 243
            S++  TC   S  CP+ S  CP+++    E+S
Sbjct: 1006 SKDAVTCQNRSVTCPKYSVLCPDSNVEPNETS 1037


>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 151 QNTGTCPESSCACPEISCACPETSCACPESS 243
           +   T PE + A PE +   PE +  CPE +
Sbjct: 84  EGNSTSPEGNSASPEGNSTSPEGNSTCPEGN 114


>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
          Length = 1421

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 142 CVSQNTGTCPESSCACPEISCACPETSCAC 231
           C   +TG  P ++C C  I    P+T+C C
Sbjct: 892 CCLMDTGL-PHTACQCCLIGTGLPQTACQC 920



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
 Frame = +1

Query: 142  CVSQNTGTCPESSCACPEISCACPETSCAC-------PESSCLC 252
            C   +TG  P ++C C  I    P T+C C       P ++C C
Sbjct: 962  CRLMDTGL-PHTACQCRLIDTGLPHTACQCRLMDTGIPHTACQC 1004



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
 Frame = +1

Query: 142  CVSQNTGTCPESSCACPEISCACPETSCAC-------PESSCLC 252
            C   +TG  P ++C C  I    P T+C C       P ++C C
Sbjct: 1004 CRLMDTGL-PHTACQCRLIDTGLPHTACQCRLMDTGLPHTACQC 1046


>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1408

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 578 GLRCNLQFGNCWLGFGSFGCCCRTF 504
           G RC++  G C LGF   G  C  F
Sbjct: 784 GDRCHVYIGKCALGFCDNGATCNNF 808


>SB_50568| Best HMM Match : EGF (HMM E-Value=0)
          Length = 792

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 578 GLRCNLQFGNCWLGFGSFGCCCRTF 504
           G RC++  G C LGF   G  C  F
Sbjct: 113 GDRCHVYIGKCALGFCDNGATCNNF 137


>SB_7889| Best HMM Match : VWC (HMM E-Value=2.6)
          Length = 203

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 166 CPESSCACPEISCACPETSCACPESSCLC 252
           CP+    CPE          A PES+C C
Sbjct: 31  CPQMMIKCPENQRVAYHEGPAVPESTCTC 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,658,874
Number of Sequences: 59808
Number of extensions: 158607
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)