Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00428
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal prote... 42 3e-04
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 30 1.9
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 30 1.9
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 30 1.9
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 30 1.9
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 29 4.5
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 29 4.5
>U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 25.1 protein.
Length = 147
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 627 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFE 728
KAL A++KVVKG+ R++R SVHFRRP T +
Sbjct: 11 KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLK 44
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 621 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKT 722
V KA++A++ VVKG + +R SVHFRRPKT
Sbjct: 8 VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKT 41
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 139 TCVSQNTGTCPESSCACPEISCACPETSCACP 234
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 193 EISCACPETSCACPESSCLC 252
E+SC C + SC+ CLC
Sbjct: 600 ELSCPCSDASCSKQTGKCLC 619
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 139 TCVSQNTGTCPESSCACPEISCACPETSCACP 234
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 193 EISCACPETSCACPESSCLC 252
E+SC C + SC+ CLC
Sbjct: 600 ELSCPCSDASCSKQTGKCLC 619
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 139 TCVSQNTGTCPESSCACPEISCACPETSCACP 234
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 193 EISCACPETSCACPESSCLC 252
E+SC C + SC+ CLC
Sbjct: 600 ELSCPCSDASCSKQTGKCLC 619
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 139 TCVSQNTGTCPESSCACPEISCACPETSCACP 234
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 193 EISCACPETSCACPESSCLC 252
E+SC C + SC+ CLC
Sbjct: 600 ELSCPCSDASCSKQTGKCLC 619
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 680 YSLPMFTFYNLPLSLKCFSNRFHYFF 603
+S + FYNL L KCFS FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 178 SCACPEISCACPETSCACPES 240
+C E SC+C C+CPES
Sbjct: 99 ACDDSECSCSCSGGECSCPES 119
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 178 SCACPEISCACPETSCACPES 240
+C E SC+C C+CPES
Sbjct: 225 ACDDSECSCSCSGGECSCPES 245
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,705,852
Number of Sequences: 27780
Number of extensions: 129692
Number of successful extensions: 616
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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