Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00428
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va...    33   0.15 
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id...    33   0.15 
At1g32190.1 68414.m03959 expressed protein                             33   0.26 
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc...    31   0.59 
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p...    28   5.5  

>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
           various ribosomal L23a proteins
          Length = 154

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 618 PVTKALKAQRKVVKGEHGKR-VRKIRNSVHFRRPKT 722
           P  KALKA + V  G+  K+  +KIR  V F RPKT
Sbjct: 14  PKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKT 49


>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
           identical to GB:AF034694
          Length = 154

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 618 PVTKALKAQRKVVKGE-HGKRVRKIRNSVHFRRPKT 722
           P  KALKA + V  G+   K+ +KIR  V F RPKT
Sbjct: 14  PKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKT 49


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 157 TGTCPESSCACPEISCACPETSCACPESSCLC 252
           +G C   SC+CP+  C  P  SC C    C C
Sbjct: 298 SGLC-RPSCSCPKPRCPKPSCSCGCGCGDCGC 328



 Score = 31.5 bits (68), Expect = 0.59
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 163 TCPESSCACPEISCACPETSCACPESSC 246
           +CP+  C  P  SC C    C C + SC
Sbjct: 306 SCPKPRCPKPSCSCGCGCGDCGCFKCSC 333



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 175 SSCACPEISCACPETSCACPESSC 246
           SSC CP   C+       CP+ SC
Sbjct: 350 SSCCCPTFKCSSCFGKPKCPKCSC 373


>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
           polycomb-group protein identical to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 902

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 142 CVSQNTGTCPESSCACPEISCACPETSCACPESSC 246
           C     GTC E  C CP+ SC      C C +S C
Sbjct: 665 CPCLLNGTCCEKYCGCPK-SCKNRFRGCHCAKSQC 698


>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
           protease, putative contains similarity to cysteine
           proteinase RD21A (thiol protease) GI:435619, SP:P43297
           from [Arabidopsis thaliana]
          Length = 452

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 142 CVSQNTGTCPESSCACPEISCACPETSCACPESSCLC 252
           C+ +  G C    C   E +  C + S  CP+S  +C
Sbjct: 377 CLYEYNGKCYSWGCCPYESATCCDDGSSCCPQSYPVC 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,323,985
Number of Sequences: 28952
Number of extensions: 117179
Number of successful extensions: 396
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)