Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00427
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    28   1.6  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   3.7  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    26   4.9  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         26   4.9  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   8.6  

>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 140 SYNADADIGMLVTGTFVGYLIIFAGAAAGYIM 235
           SYN + ++ +     F+G+L++  G   GY +
Sbjct: 17  SYNENTNLSLKTIDAFLGFLVVVGGLQFGYAL 48


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -3

Query: 214 TSEYDEVPDKGTGDEHANIRICIVTVVMESDARTRKCQLQKLDDRQPADGHDS 56
           ++E  +V + G+ D+  NIR  +V  V E+D RT   Q  K +  +PA   D+
Sbjct: 17  SAEQLDVVESGSIDQQ-NIRAWVVRKVKENDKRTSTNQSFKWEAVKPASCLDA 68


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 125 ALHYHSYNADADIGMLVTGTFVGYLII--FAGAAAGYIM 235
           A  Y S+   A I ML+  +F GY I+  F GA  G+ +
Sbjct: 116 AAMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFL 154


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 196 VPDKGTGDEHANIRICIVTVVMESDARTRKC-QLQKLDDRQPAD 68
           +P+K T D + N     V  V++S  R R+  QL+ LDD Q  D
Sbjct: 34  LPEKSTSD-YENSGKGTVGQVLQSLQRVRRALQLRSLDDNQSTD 76


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +3

Query: 111 RVRASLSITTVTMQMRILACSSPVPLSGTSSYSL----VRPRAT*CRLLHTNDRHLLFAG 278
           R  A+ ++  V M +   A +  + +S   +Y +    VRPRAT   LL+T    L+  G
Sbjct: 348 RAGANATLLLVFMAVTSAASAELIAVSSIFTYDIYKQYVRPRATGKELLYTGHASLIVFG 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,133
Number of Sequences: 5004
Number of extensions: 59948
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)