Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00427
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754...    29   5.2  
03_06_0653 - 35305279-35306163                                         28   6.8  
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241...    28   9.0  

>10_08_0259 +
           16274430-16274747,16275180-16275242,16275329-16275424,
           16275526-16275618,16276415-16276605,16276684-16276921,
           16277805-16277900,16278324-16278404,16278532-16278939,
           16279048-16279331,16279460-16279547,16279630-16279830,
           16280032-16280118,16280119-16280238,16280536-16280708,
           16281914-16282055,16282292-16282414,16282601-16282656,
           16282735-16283038,16283154-16283283,16283491-16283549,
           16283829-16284061,16285480-16285527,16285765-16285843,
           16285925-16286169,16286338-16286722
          Length = 1446

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 510 THCICMQHLKSFSDCAALFCVRSLASSLREDSINK 406
           T C+  + L+S S C  LFC   L+ +  E+ +++
Sbjct: 537 TWCVKSEQLQSCSSCKLLFCRNCLSKNFGEEGLSE 571


>03_06_0653 - 35305279-35306163
          Length = 294

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 226 ARGRTSEYDEVPDKGTGDEHANIRICIVTVVMESDARTRKCQLQKL 89
           A   +SE +   D   GDE A  R C      E+  R  +CQ +K+
Sbjct: 175 AASSSSEEEAACDDDDGDECAARRWCCAREYFEAKERWEECQFKKM 220


>03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,
            2416288-2416365,2416880-2416999,2418021-2418091,
            2418808-2418900,2419242-2419311,2420236-2420436,
            2421345-2421557,2422354-2422440,2422441-2422652,
            2422901-2423042,2423424-2423592,2424050-2424126,
            2424393-2424563,2425095-2425171,2425299-2425401,
            2426066-2426185,2426301-2426444,2426826-2426975,
            2427398-2427541,2427816-2427903,2428672-2428799,
            2429329-2429533,2429843-2430015,2430174-2430392,
            2430490-2430684
          Length = 1213

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +2

Query: 80   SIIKFLELALTCSCVALHYHSYNADADIGMLVTGTFVGYLIIFAGAAAGYIMQT--PSHK 253
            S++++  LA T + +  HY  ++A    G +   T   +  +F+G    Y+ ++  PS K
Sbjct: 1030 SVLEYA-LAFTSAALDRHYSKWSATPKTGFIDITTSKDFYRVFSGLQYSYLEESINPSRK 1088

Query: 254  RST--SSIRWS 280
            +     S+ W+
Sbjct: 1089 QEMLGDSVAWA 1099


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,952,236
Number of Sequences: 37544
Number of extensions: 389782
Number of successful extensions: 872
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)