Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00427
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)                    30   1.7  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         29   3.0  
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)               29   5.3  
SB_19566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)                    29   5.3  
SB_59743| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)               29   5.3  
SB_12680| Best HMM Match : Ras (HMM E-Value=3.4e-05)                   28   7.0  
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)                  28   9.2  
SB_18155| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)                 28   9.2  

>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 263  SSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWPXXXXXXXXXXXXXRNEEAK 442
            S +R  VL C S+ V  LL+ S ++V +     +W R   P             RN++ +
Sbjct: 972  SPLRVLVLSCFSVVVAFLLSPSRVLVLSCFSQASWTRRPSPRGRLHSPIQARPNRNDQER 1031

Query: 443  LRTQNRAAQSE 475
            +    R  Q +
Sbjct: 1032 IYRHARVCQGD 1042


>SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)
          Length = 842

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 513 KTHCICMQHLKSFSDCAALFCVRSLASSLRED 418
           K+ C C Q +K +SDC  L C       ++ D
Sbjct: 288 KSRCKCFQSVKRYSDCDCLGCENPYGKKMQRD 319


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 226 LHNADSFTQTIDIFYSL--VGVALFVASGAIIIDRFQHYGKSEI 351
           L  A S T T+ I  +   VGV ++   G  ++D  QHY K+E+
Sbjct: 517 LEYARSVTSTLKISSAETHVGVTVYATQGKNVVDLKQHYNKTEL 560


>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
 Frame = +1

Query: 76  VVYHQVSGAGTYVFVRRSP---LPQLQCRCGYWHARHRYLCRVPHHIRWCG---RGLHNA 237
           V+ H+ S A +  F+   P   LP+L+C CGY  +    LC     +  C    R +H+ 
Sbjct: 273 VIQHEWSEAFS-CFLPEKPTMQLPKLKCACGYVRSMCVLLCAQCRRVVMCACACRYVHSV 331

Query: 238 DSFTQTIDIFYSLVGVALFVASGAIII 318
                 + +    V    ++ SG +++
Sbjct: 332 CVMCACVRVVMCAVCACRYLQSGGVVM 358


>SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)
          Length = 478

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -3

Query: 205 YDEVPDKGTGDEHANIRICIVTVVMESDARTRKCQLQKLDDRQPADGHDSLLNLN 41
           YD   +  T   H+ +   I+T V ES  R+ + Q++  DD+   D HD L  L+
Sbjct: 49  YDADLESSTRSWHSPLAPDILTGVKESRRRSVEVQVEIDDDQALQDMHDKLEKLD 103


>SB_19566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +2

Query: 191 GY-LIIFAGAAAGYIMQTPSHKRSTS-SIRW--SVLPCSSLAVPLLLTDSNIMVRARSKT 358
           GY L +   A A  +   P +  S S S+RW   V+     A+P++L   N+       +
Sbjct: 104 GYRLSVIGEAVAALVFCGPHNPNSLSGSLRWRNDVIRAKGTAIPMVLVVDNLPSNPGKGS 163

Query: 359 RTWLRP 376
           + W+ P
Sbjct: 164 KEWIGP 169


>SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1514

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 153  MRILACSSPVPLSGTSSYSLVRPRAT*CRLLHTNDRHLLFAGRCCLVR 296
            ++I+A  S   L+GTS Y+L       C  LH   R+ L   +C +VR
Sbjct: 1401 VQIVALVSSYFLAGTSFYTLTVMSLDRCLALHLELRYRLIVTQCRVVR 1448


>SB_59743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 153 MRILACSSPVPLSGTSSYSLVRPRAT*CRLLHTNDRHLLFAGRCCLVR 296
           ++I+A  S   L+GTS Y+L       C  LH   R+ L   +C +VR
Sbjct: 410 VQIVALVSSYFLAGTSFYTLTVMSLDRCLALHLGLRYRLIVTQCRVVR 457


>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
          Length = 834

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -3

Query: 205 YDEVPDKGTGDEHANIRICIVTVVMESDARTRKCQLQKLDDRQPADGHDSLLNLN 41
           YD   +  T   H+ +   I+T V ES  R+ + Q++  DD+   D HD L  L+
Sbjct: 609 YDADLESSTRSWHSPLAPDILTGVKESRRRSVEVQVEIDDDQALQDMHDKLEKLD 663


>SB_12680| Best HMM Match : Ras (HMM E-Value=3.4e-05)
          Length = 243

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 209 AGAAAGYIMQTPSHKRSTSSIRWS--VLPCSSLAVPLLLTDSNIMVRARSKTRTWL 370
           +GA   +  ++PS  R +S+++WS  V   +S +VP++L   NI    R K   W+
Sbjct: 133 SGALVFWGPKSPS--RLSSALKWSEKVKEANSGSVPMVLVVENIPPSKRGKPMEWI 186


>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
          Length = 553

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -1

Query: 423 EDSINK*DSAIDDGQRGLSQVLVFDLALTIMLESVNNNGTASDEQGNT----DQRIEDVD 256
           ++SIN  D++I+D    +    ++D   +I   S+N+N  + ++  N+    D  I D D
Sbjct: 415 DNSINDNDNSINDNDNSIYDSSIYDNDNSIYDNSINDNDNSINDNDNSINDNDNSINDND 474


>SB_18155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +3

Query: 57  ESWPSAGCLSSSFWSWHLRVRASLSITTVTMQMRILACSSPVPLSGTSSYSLVRPRAT 230
           ES+P+ G + SS    H RVR+S ++    ++       + V  S T  ++ VR  AT
Sbjct: 125 ESFPALGRVRSSATLGHARVRSSATLGHARVRSSATLGHARVRSSATLGHARVRSSAT 182


>SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)
          Length = 585

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +1

Query: 232 NADSFTQTIDIFYSLVGVALFVASGAIIIDRFQHYGKSEIKDKNLAKASLAIINGAILLV 411
           NA    +T  I   ++GV L V     ++ RFQ  G    + +++  A+L+ +N  +LLV
Sbjct: 17  NASILIRTSLISAIIMGVLLNVLP-LFVVFRFQSKGSRRPQGRDVLLAALSFLNSLVLLV 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,013,205
Number of Sequences: 59808
Number of extensions: 461648
Number of successful extensions: 1196
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)