Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00426
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4156| Best HMM Match : Ets (HMM E-Value=0)                          31   0.99 
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)                  30   2.3  
SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                29   4.0  
SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07)                 28   9.2  
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)                  28   9.2  
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)                   28   9.2  

>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
          Length = 516

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +2

Query: 83  PQSPTPNSKTIFTTASSL----PITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAW 250
           P S +  S T +T  SSL    P   I       S+R+     S+ S  ++Y+    T W
Sbjct: 247 PASVSTQSCTAYTPTSSLYDSRPHPVITSNPNAASSRSTDYSMSRYSNNDAYDRATPT-W 305

Query: 251 SSLPAMAPRLQRYRPGVLP 307
           S+  +  PRL   + GV+P
Sbjct: 306 SAPASQTPRLSHMKDGVVP 324


>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
          Length = 776

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 55  FVASLYANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVIT 204
           F ASL A + S SDS  EDDL    ++ + DH   K++ + + +K +  T
Sbjct: 548 FRASLAAQQDSTSDSSSEDDL----IMDEKDHPQGKARSLSDKQKCKNTT 593


>SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 355

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 356 QARRSRFDVGR*EQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQ 487
           Q  R +F++   +QQ+WQ   R+WQ Q   +SQLE +    E Q
Sbjct: 292 QQSRQQFEL---QQQQWQQQQRQWQ-QQLQQSQLEQQQRQQEMQ 331


>SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07)
          Length = 635

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +1

Query: 79  ETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCME*P 258
           E    DSK E D+ + + V  Y+ +V        DK S V+ ++ N L+ NNK      P
Sbjct: 104 EHESGDSKDESDVLDMVYVL-YNEAVVCYNP---DKASAVLNHIENVLMVNNKQADTSQP 159

Query: 259 TSYG 270
           T+ G
Sbjct: 160 TTQG 163


>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
          Length = 603

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 392 EQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCETQRN 520
           +QQ  Q  L+R Q Q     Q + +  + +QQ L Q C T  N
Sbjct: 295 QQQLLQQHLQRQQQQQRRHQQQQQQQQLHQQQRLEQSCVTANN 337


>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
          Length = 404

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 77  TKPQSPTPNSKTIFTTASSLPITTIP--LKRANRSTRTRRAKSSQ 205
           T P  PTP  K   +  +++P+T +P    +  +  +T+ AK S+
Sbjct: 244 TAPPKPTPPPKPAPSLKTTIPLTDVPPLTSKEKKHEKTKTAKPSK 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,036,533
Number of Sequences: 59808
Number of extensions: 416287
Number of successful extensions: 1523
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)