Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00425
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.5  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   5.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.5  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   9.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 260 SSDEVKCIEEEGE-DDNTASQETL 328
           S+DEVK  ++EG+ +D   S E L
Sbjct: 14  STDEVKVFKDEGDGEDEKRSSENL 37


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 248 SSGMIPAVWSEAGAGRQVLLHAAVHAGTEVELHVESFF*KRIFGGIFVEHN 96
           SS + PAV +  GAG   ++  +    T V L +       +F G+F E +
Sbjct: 280 SSLLEPAVGTMTGAGGTAIVSISTSVSTSVYLAI-------VFNGLFTEED 323


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 97  LCSTKIPPKIRFQKKDSTWSSTS 165
           LC  KI  K R  K++ T  STS
Sbjct: 367 LCGMKIVKKRRKDKREITRKSTS 389


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 452 CDVNYISVWDR 420
           CD+ ++ VW+R
Sbjct: 712 CDLGWVEVWER 722


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 291 KGKMTTQPVKKLYNL 335
           +G +T+  +KKL+NL
Sbjct: 125 RGDVTSTTIKKLFNL 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,793
Number of Sequences: 336
Number of extensions: 2569
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)