Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00425
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    29   0.87 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    28   1.5  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   8.1  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   8.1  

>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 57  SMVSELNYMSQIVVMLYEDPTKDPFSEERFHVELHFSPG--VNCCVQKNL 200
           + + EL+Y++QI   L+E    +P   + F V +  SPG    C +  NL
Sbjct: 827 NQIPELDYLTQICFELFE--RTNPSGNKEFSVRITLSPGCYAQCPLDMNL 874


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 491 LNHELRCARSPTTTPRHRSISNRLKKRLKSI 583
           +++ + C   P+TTPR R++   L K + S+
Sbjct: 383 ISYLISCLHIPSTTPRERNVETSLHKVVSSL 413


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 350 YRHASQVVEFLDWLCCH 300
           YRH ++ V F DWL  H
Sbjct: 231 YRHMNRFVAFKDWLFSH 247


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 452 TVSGHE-ASSLAARL-NHELRCARSPTTTPRHRSISNR 559
           TV G +   +LA+ + +HE R AR+P   P H   S+R
Sbjct: 4   TVDGEKYIRNLASYIRSHEKRFARAPYRAPNHSIFSDR 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,874
Number of Sequences: 5004
Number of extensions: 43678
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)