Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00425
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891... 36 0.042
01_06_0909 - 32903520-32903828,32903899-32903973,32904068-329042... 32 0.39
01_06_0907 - 32897168-32897476,32897547-32897621,32897716-328978... 32 0.39
02_05_1330 - 35731296-35731451,35732118-35732201,35732683-357327... 31 0.91
01_05_0047 + 17557087-17558350,17558396-17558475,17559115-175591... 29 2.8
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440... 29 3.7
03_05_0441 + 24350026-24350081,24350186-24351011,24351088-243511... 29 3.7
01_05_0561 - 23296977-23297174,23297304-23297431,23297990-232983... 29 3.7
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 28 6.4
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206 28 6.4
02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236 28 6.4
05_01_0300 + 2340251-2340791,2340892-2341325 28 8.5
>03_05_0741 + 27287414-27287479,27287887-27287946,27288949-27289112,
27289158-27289241,27290115-27290178,27291181-27291334,
27291605-27291675,27292138-27292242,27292734-27292826,
27293672-27293746,27294114-27294199,27294293-27294499,
27294585-27294684,27294765-27294835,27294960-27295041,
27295920-27296078,27296480-27296533,27296775-27296817,
27297630-27297712,27298569-27298631,27298720-27298794,
27299620-27299745,27300267-27300499,27300611-27300655,
27300953-27301019,27302095-27302166,27302276-27302520,
27302598-27302655,27302743-27302910,27303224-27303298,
27303412-27303669
Length = 1101
Score = 35.5 bits (78), Expect = 0.042
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 42 AMEYVSMVSELNYMSQIVVMLYEDPTKDPFSEERFHVELHFSPGVN 179
A++ + EL+YMS IV+ ++E+ E+RF +E+ FS G +
Sbjct: 966 ALDRLHRTRELDYMSNIVLRMFENTEVPLEDEKRFRIEMTFSRGAD 1011
>01_06_0909 - 32903520-32903828,32903899-32903973,32904068-32904235,
32904508-32904565,32904638-32904879,32905145-32905216,
32905865-32905943,32906734-32907062,32907137-32907256,
32907355-32907429,32908260-32908342,32908942-32908984,
32909271-32909429,32910203-32910281,32910685-32910755,
32910847-32910946,32911023-32911229,32911348-32911442,
32912362-32912436,32912621-32912713,32913078-32913182,
32913851-32913921,32914943-32915096,32916035-32916098,
32916717-32916800,32917543-32917589,32918352-32918411,
32918521-32918592
Length = 1062
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 36 RRAMEYVSMVSELNYMSQIVVMLYEDPTKDPFSEERFHVELHFSPGVN 179
+ A++ + EL+YMS IV+ ++E+ +RF +E+ +S G +
Sbjct: 908 KNALDNLFKTRELDYMSYIVLRMFENTEVSLEDPKRFRIEMTYSRGAD 955
>01_06_0907 -
32897168-32897476,32897547-32897621,32897716-32897883,
32898156-32898213,32898286-32898527,32898630-32898726,
32898827-32898921
Length = 347
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 36 RRAMEYVSMVSELNYMSQIVVMLYEDPTKDPFSEERFHVELHFSPGVN 179
+ A++ + EL+YMS IV+ ++E+ +RF +E+ +S G +
Sbjct: 193 KNALDNLFKTRELDYMSYIVLRMFENTEVSLEDPKRFRIEMTYSRGAD 240
>02_05_1330 -
35731296-35731451,35732118-35732201,35732683-35732774,
35733294-35733324
Length = 120
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = -3
Query: 676 LEVAHLAAMPCRCAARCHGSACVGRSFGPAADALQTFL*TIADRS 542
+ +A++ + R A + GSAC+ + G AA A Q++L I DRS
Sbjct: 57 IALAYMRVLLSRLAPQQEGSACINGAIGDAAVA-QSYLERIGDRS 100
>01_05_0047 +
17557087-17558350,17558396-17558475,17559115-17559149,
17559545-17559551,17560405-17560719
Length = 566
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +2
Query: 428 IPICNLHHTVSGHEASSLAARLNHELRCARSPTTTPRHRSISNRLKKRLKSIRR 589
IP LH T++ EA++L + A+S ++ P+H+S+ ++K + +RR
Sbjct: 159 IPSDVLHQTLTESEAAALIDAAAAD--SAKSDSSPPKHKSLDEGIEKAAELLRR 210
>11_01_0559 -
4406815-4406922,4408954-4409042,4409177-4409270,
4409344-4409481,4409570-4409727,4409826-4409916,
4410003-4411637
Length = 770
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 134 RRKIPRGAPLQSRRELLRAEEPAARPRLPTTQP 232
RR++ +G L S R+LLR+ RP LP P
Sbjct: 119 RRRLLQGMGLASSRDLLRSRSARMRPILPPNIP 151
>03_05_0441 +
24350026-24350081,24350186-24351011,24351088-24351189,
24351278-24351343,24351418-24351483,24351594-24351800,
24351925-24352086
Length = 494
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 461 GHEASSLAARLNHELRCARSPTTTPRHRSISNRLKKRLKSIRRGPEATTNTSRAMTTGGA 640
GHEA+++A+ C TTT S SNR KR K + ++ + + A + A
Sbjct: 245 GHEATTVASSSGRS-NCCFGTTTTTEPTSTSNRSSKR-KRLDTTEDSESPSEDAESESAA 302
Query: 641 AAR 649
AR
Sbjct: 303 LAR 305
>01_05_0561 -
23296977-23297174,23297304-23297431,23297990-23298362,
23298629-23299069
Length = 379
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 128 VFRRKIPRGAPLQSRRELLRAEEPAARPRL 217
+F K+P G P+ + +L A PA P+L
Sbjct: 36 IFPYKLPHGTPVSTHPDLAAAASPAPHPKL 65
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 497 HELRCARSPTTTPRHRSISNRLKKRLKSIRRGPEATTNTSRAMTTGGAAAR 649
H+ R A +PTT+P S R +L + P A+ N + A+ A R
Sbjct: 723 HDHRPANTPTTSPEPHSDRPRRVVQLPRRLQEPSASANLAHAVAATARAGR 773
>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
Length = 961
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +2
Query: 482 AARLNHELRCARSPTTTPRHRSISNRLKKRLKSIRRGPEATTNTSRAMTTGGAAARHRGQ 661
A ++ R R+ T R +I + + +RRGP+A N R AA G
Sbjct: 24 AGSVSSRRRARRAAAATRRSSAIPSSTPPTQEDVRRGPDARFNIERRRNDRRAAHASEGA 83
Query: 662 MS 667
S
Sbjct: 84 SS 85
>02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236
Length = 1096
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 341 ASQVVEFLDWLCCHLPLPLRCISPRPMNSVISSGMIPAV 225
A VV LD+L H PLP+ +P N ++ S M+ V
Sbjct: 897 AIDVVSALDYLHQHRPLPIIHCDLKPSNILLDSEMVAHV 935
>05_01_0300 + 2340251-2340791,2340892-2341325
Length = 324
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = +2
Query: 452 TVSGHEASSLAARLNHELRCARSPTTTPRHRSISNRLKKRLKSIRRGPEATTNTSRAMTT 631
T +G A LAA + C T H + RL KR+ +R G A TT
Sbjct: 6 TPTGAAADDLAAANANAKECVFCEMTRQHHPQCARRLPKRIILVRHGESQGNLDMSAYTT 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,363,499
Number of Sequences: 37544
Number of extensions: 371185
Number of successful extensions: 1458
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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