Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00425
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)                   77   1e-14
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     30   1.6  
SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39)            29   4.9  
SB_34673| Best HMM Match : UK (HMM E-Value=0.6)                        29   4.9  
SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)                 28   8.6  
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)                 28   8.6  

>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
          Length = 1068

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 31/54 (57%), Positives = 44/54 (81%)
 Frame = +3

Query: 21  KDEQWRRAMEYVSMVSELNYMSQIVVMLYEDPTKDPFSEERFHVELHFSPGVNC 182
           +D QW+RA++++S + EL+YM+QIV+MLYEDPT D  S+ RFH+ELHFS  + C
Sbjct: 796 QDAQWKRAIDFLSEIPELHYMTQIVLMLYEDPTADLQSDNRFHIELHFSSDMEC 849


>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 577  EHPPRARSYDQHKQSHDNGRRSGTASRPDE---LPQDAGTRSARQTRR 711
            E P  +R + QHK  H  G +SG+   PD+    P  +  RSA+ + R
Sbjct: 972  ETPGESRGFSQHKGGHPGGFKSGSV-EPDQQVLAPGPSSPRSAQPSGR 1018


>SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39)
          Length = 1037

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 476 SLAARLNHELRCARSPTT--TPRHRSISNRLKKRLKSIRRGPEATTNTSRAMTTGGAAA 646
           +L  R NHE R AR PT+  T R R    +++   +S  RG       + A   G   A
Sbjct: 762 NLHRRANHEPRTARDPTSPLTSRSRKALGKVEPNQQSEERGASCRRCAAAAGNPGAERA 820


>SB_34673| Best HMM Match : UK (HMM E-Value=0.6)
          Length = 641

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 516 RAHRSSWLRRAASEDASCPLTV*CKLHIGMGSDAFSMVVRL 394
           +A R +W  R    +   P+   C LH+ +G+  FSM +RL
Sbjct: 536 KAIRETWWSRCKPPEVGTPVFSMC-LHLEVGTPVFSMCLRL 575


>SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +1

Query: 559 SKETSEEHPPRARSYDQHKQSHDNGRRSGTASRPDELPQDAGTRSARQTRRG 714
           S+   E   PRAR     +   ++GRR        E  +++G R AR    G
Sbjct: 129 SESERESRRPRARHDTDGESKRESGRRRARHDTDSESEKESGRRRARHDTDG 180


>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
          Length = 186

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = -3

Query: 667 AHLAAMPCRCAARCHGSACVGRSFGPAADALQTFL*TIADRSVPXXXXX*ACAPQLV 497
           AH+   P  C+ RC     +     P+   +  F  T + R VP       C+P  V
Sbjct: 65  AHVDVFPITCSCRCVSHHVLMSMCSPSRAHVDVFPITCSCRCVPHRMVMSMCSPSRV 121


>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 536 RHRSISN-RLKKRLKSIRRGPEATTNTSRAMTTGGAAARHRGQMS 667
           R RS+S+ R+  RL S R+G  +     R  +TG   +R   Q S
Sbjct: 475 RSRSLSSDRVGTRLPSARKGSASKIGIPRTSSTGSLGSRRSSQSS 519


>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
          Length = 507

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +2

Query: 464 HEASSLAARLNHELRC-----ARSPTTTPRHRSISNRLKKRLKSIRRGPEATTNTSRA 622
           HE  +   R+  +L+      +RSP+   R RS S   ++R KS  R P  +   SR+
Sbjct: 442 HEGETSYIRVKSDLQSRSHSRSRSPSPRRRSRSRSRSPRRRPKSYSRSPSGSPRRSRS 499


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,018,764
Number of Sequences: 59808
Number of extensions: 380430
Number of successful extensions: 1370
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)