Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00425
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical p... 62 3e-10
U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical p... 62 3e-10
Z81539-1|CAB04389.1| 228|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr... 29 4.4
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein. 29 4.4
AF038618-9|AAB92066.1| 304|Caenorhabditis elegans Hypothetical ... 28 5.8
U59211-1|AAB09670.1| 420|Caenorhabditis elegans embryonic membr... 28 7.6
U53343-3|AAA96220.2| 420|Caenorhabditis elegans Innexin protein... 28 7.6
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 28 7.6
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 28 7.6
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 28 7.6
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 28 7.6
>U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical
protein F46F11.1b protein.
Length = 1225
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/57 (47%), Positives = 42/57 (73%), Gaps = 3/57 (5%)
Frame = +3
Query: 24 DEQWRRAMEYVSMVSELNYMSQIVVMLYEDPTKDPFSEE---RFHVELHFSPGVNCC 185
D++W+RAM ++S V+E NYM+Q+V+M+YED K+ + RFH+E+ FSPG+ C
Sbjct: 864 DKKWQRAMNFLSGVTEFNYMTQVVLMVYEDSRKENDEADTGPRFHIEILFSPGLYPC 920
>U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical
protein F46F11.1a protein.
Length = 1339
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/57 (47%), Positives = 42/57 (73%), Gaps = 3/57 (5%)
Frame = +3
Query: 24 DEQWRRAMEYVSMVSELNYMSQIVVMLYEDPTKDPFSEE---RFHVELHFSPGVNCC 185
D++W+RAM ++S V+E NYM+Q+V+M+YED K+ + RFH+E+ FSPG+ C
Sbjct: 864 DKKWQRAMNFLSGVTEFNYMTQVVLMVYEDSRKENDEADTGPRFHIEILFSPGLYPC 920
>Z81539-1|CAB04389.1| 228|Caenorhabditis elegans Hypothetical
protein F46A8.3 protein.
Length = 228
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +1
Query: 556 SSKETSEEHPPRARS-----YDQHKQSHDNGRRSGTASRPDELPQDAGTRSARQ 702
+S +SEEH R R +D +GRR G RP P+ A T R+
Sbjct: 37 TSSSSSEEHRYRPRGGKRPKFDDDSSDDYSGRRGGGRQRPPRPPRPAPTPKPRE 90
>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
protein F13E6.6 protein.
Length = 1340
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/73 (21%), Positives = 33/73 (45%)
Frame = -2
Query: 221 SEAGAGRQVLLHAAVHAGTEVELHVESFF*KRIFGGIFVEHNDNLRHVVQFRHHRNVLHR 42
S+ +++ + A T++ +++ F K+ GG E + L H+V R + HR
Sbjct: 343 SDTDTLKRIFVPGRQRAVTDINMYLNDFRQKKQLGGQVSESTNQLTHMV--RGDMTMEHR 400
Query: 41 TTPLLIFHHIHSC 3
++F + C
Sbjct: 401 VGEQMLFRCLEQC 413
>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
protein F13E6.6 protein.
Length = 1340
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/73 (21%), Positives = 33/73 (45%)
Frame = -2
Query: 221 SEAGAGRQVLLHAAVHAGTEVELHVESFF*KRIFGGIFVEHNDNLRHVVQFRHHRNVLHR 42
S+ +++ + A T++ +++ F K+ GG E + L H+V R + HR
Sbjct: 343 SDTDTLKRIFVPGRQRAVTDINMYLNDFRQKKQLGGQVSESTNQLTHMV--RGDMTMEHR 400
Query: 41 TTPLLIFHHIHSC 3
++F + C
Sbjct: 401 VGEQMLFRCLEQC 413
>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
Length = 1293
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/73 (21%), Positives = 33/73 (45%)
Frame = -2
Query: 221 SEAGAGRQVLLHAAVHAGTEVELHVESFF*KRIFGGIFVEHNDNLRHVVQFRHHRNVLHR 42
S+ +++ + A T++ +++ F K+ GG E + L H+V R + HR
Sbjct: 296 SDTDTLKRIFVPGRQRAVTDINMYLNDFRQKKQLGGQVSESTNQLTHMV--RGDMTMEHR 353
Query: 41 TTPLLIFHHIHSC 3
++F + C
Sbjct: 354 VGEQMLFRCLEQC 366
>AF038618-9|AAB92066.1| 304|Caenorhabditis elegans Hypothetical
protein F42G8.5 protein.
Length = 304
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 512 ARSPTTTPRHRSISNRLKKRLKSIRRGPEATTNTSRAMTTGGAAARHRGQM 664
+R P+ R +S +KR KS+ GP TN++R+ +G + R Q+
Sbjct: 256 SRQPSVASRRQSSEASSQKRSKSM--GPLHRTNSNRSKGSGRSRRRENSQI 304
>U59211-1|AAB09670.1| 420|Caenorhabditis elegans embryonic membrane
protein protein.
Length = 420
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -2
Query: 161 VELHVESFF*KRIFGGIFVEHNDNLRHVVQFRHHRNVLHRTTPLLIFHHIH 9
++ H + K I +F +H +NL+H F H + + L HH H
Sbjct: 351 IDDHAGAMVTKEICEELFKKHGENLQHNRDFHHGHSTKSTSPGLEEGHHEH 401
>U53343-3|AAA96220.2| 420|Caenorhabditis elegans Innexin protein 3
protein.
Length = 420
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -2
Query: 161 VELHVESFF*KRIFGGIFVEHNDNLRHVVQFRHHRNVLHRTTPLLIFHHIH 9
++ H + K I +F +H +NL+H F H + + L HH H
Sbjct: 351 IDDHAGAMVTKEICEELFKKHGENLQHNRDFHHGHSTKSTSPGLEEGHHEH 401
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = +1
Query: 472 VLAGGAPQPRAAVRTLTXXXXXXXXXXXSSKETSEEHPPRARSYDQHKQSHDNGRRSGTA 651
V AGGA + R +R + + P RARS D+ Q + G A
Sbjct: 367 VPAGGAARNRQPLRVNPGTPSTTIKKPPVASSVQRQPPTRARSVDRSGQPPISASTPGKA 426
Query: 652 SRPD 663
SR D
Sbjct: 427 SRAD 430
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = +1
Query: 472 VLAGGAPQPRAAVRTLTXXXXXXXXXXXSSKETSEEHPPRARSYDQHKQSHDNGRRSGTA 651
V AGGA + R +R + + P RARS D+ Q + G A
Sbjct: 367 VPAGGAARNRQPLRVNPGTPSTTIKKPPVASSVQRQPPTRARSVDRSGQPPISASTPGKA 426
Query: 652 SRPD 663
SR D
Sbjct: 427 SRAD 430
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = +1
Query: 472 VLAGGAPQPRAAVRTLTXXXXXXXXXXXSSKETSEEHPPRARSYDQHKQSHDNGRRSGTA 651
V AGGA + R +R + + P RARS D+ Q + G A
Sbjct: 367 VPAGGAARNRQPLRVNPGTPSTTIKKPPVASSVQRQPPTRARSVDRSGQPPISASTPGKA 426
Query: 652 SRPD 663
SR D
Sbjct: 427 SRAD 430
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = +1
Query: 472 VLAGGAPQPRAAVRTLTXXXXXXXXXXXSSKETSEEHPPRARSYDQHKQSHDNGRRSGTA 651
V AGGA + R +R + + P RARS D+ Q + G A
Sbjct: 367 VPAGGAARNRQPLRVNPGTPSTTIKKPPVASSVQRQPPTRARSVDRSGQPPISASTPGKA 426
Query: 652 SRPD 663
SR D
Sbjct: 427 SRAD 430
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,292,024
Number of Sequences: 27780
Number of extensions: 274565
Number of successful extensions: 1024
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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