Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00425
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -3

Query: 616 ACVGRSFGPAADALQTFL*TIADRSVPXXXXX*ACAPQLVV 494
           AC     G  A      + T+ +RSV        C PQ+V+
Sbjct: 238 ACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVI 278


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 574  EEHPPRARSYDQHKQSHDNGRRSGTASRPD 663
            E  PP  R++DQ+  S ++ + S   S  +
Sbjct: 1858 EPPPPPPRNHDQNNSSFNDSKESNEISEAE 1887


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 649 PCRCAARC 626
           PCRC ARC
Sbjct: 478 PCRCHARC 485


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 649 PCRCAARC 626
           PCRC ARC
Sbjct: 478 PCRCHARC 485


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 208 PGGRFFCTQQFTPGLKWSSTWNLSSENGS-LVGSS 107
           P GRFFC  +    +K S+  N   +N S +VG +
Sbjct: 131 PPGRFFCEVRPIKRVKDSTNCNCGWKNPSRIVGGT 165


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 96  RQSATCSSIPTPSKRTPS 43
           R  +T S +P P  RTPS
Sbjct: 555 RLKSTVSLLPLPLARTPS 572


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,460
Number of Sequences: 438
Number of extensions: 3391
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)