Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00425
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01310.1 68416.m00042 expressed protein similar to unknown pr...    38   0.009
At5g15070.1 68418.m01766 expressed protein                             34   0.081
At4g03300.1 68417.m00451 Ulp1 protease family protein contains P...    30   1.3  
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ...    30   1.3  
At4g08480.1 68417.m01399 mitogen-activated protein kinase, putat...    29   4.0  
At5g19440.1 68418.m02316 cinnamyl-alcohol dehydrogenase, putativ...    28   5.3  
At4g38650.1 68417.m05471 glycosyl hydrolase family 10 protein si...    28   5.3  
At1g65680.1 68414.m07455 beta-expansin, putative (EXBP2) similar...    28   5.3  
At4g38300.1 68417.m05412 glycosyl hydrolase family 10 protein si...    28   7.1  
At4g02030.1 68417.m00273 expressed protein                             28   7.1  
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    28   7.1  
At4g36680.1 68417.m05204 pentatricopeptide (PPR) repeat-containi...    27   9.3  
At4g29440.1 68417.m04203 expressed protein  contains Pfam profil...    27   9.3  
At3g27325.1 68416.m03415 expressed protein                             27   9.3  

>At3g01310.1 68416.m00042 expressed protein similar to unknown protein
            GB:BAA24863 [Homo sapiens], unknown protein GB:BAA20831
            [Homo sapiens], unknown protein GB:AAB42264
            [Caenorhabditis elegans]
          Length = 1056

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +3

Query: 36   RRAMEYVSMVSELNYMSQIVVMLYEDPTKDPFSEERFHVELHFSPGVNCCVQKN 197
            + A+E +    EL+YMS IV+ L+E+        +RF +EL FS G +    +N
Sbjct: 916  QNALERLCKTKELDYMSYIVLRLFENTEVSLEDPKRFRIELTFSRGADLSPLRN 969


>At5g15070.1 68418.m01766 expressed protein
          Length = 1049

 Score = 34.3 bits (75), Expect = 0.081
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 42   AMEYVSMVSELNYMSQIVVMLYEDPTKDPFSEERFHVELHFSPGVN 179
            A++ +    EL+YMS +V+ L+E+        +RF +EL FS G +
Sbjct: 912  ALDRLCKTKELDYMSYVVLRLFENTEISLDDPKRFRIELTFSRGAD 957


>At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
           At4g05280, At1g25886
          Length = 1285

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 98  YALRRSHQRSVFRRKIPRGAPLQSRRELLRAEEPA-ARPRLPTTQPESFHY**PSSSDEV 274
           ++ + + Q  +FR K P  AP  SR     +  PA A+P LP   P    +  PSS  ++
Sbjct: 76  HSAKGAEQTPMFRAKPPLQAPSSSR-----STPPADAKPGLPLEAPSVLSFHQPSSGFDL 130

Query: 275 KCIEEEGEDDNT 310
            C     ++  T
Sbjct: 131 YCFSRRSQEKVT 142


>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type, domain
          Length = 745

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
 Frame = +2

Query: 434 ICNLHHTVSGHEASSLAARLNHELRCARSPTTTPRHRSISNRL-----KKRLKSIRRGPE 598
           + N   T   H A+   +R         S TTT R R  +NR       +   ++ RGP 
Sbjct: 355 VSNTTTTRQRHRANQGQSRFGQNSESLVSNTTTTRQRHQTNRSATSGSSQAWPALNRGPA 414

Query: 599 ATTNTSRAMTTGGAA---ARHRGQMSYLKML 682
             + TSR  ++G +A   +RH  ++   + L
Sbjct: 415 EISITSRVQSSGASAQSQSRHHDRVESTRTL 445


>At4g08480.1 68417.m01399 mitogen-activated protein kinase, putative
           similar to mitogen-activated protein kinase [Arabidopsis
           thaliana] gi|1255448|dbj|BAA09057; contains Pfam
           PF00069: Protein kinase domain
          Length = 773

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 257 SSSDEVKCIEEEGEDDNTASQET 325
           SSS E  C EEE EDD    +ET
Sbjct: 434 SSSSENGCDEEEAEDDKVEKEET 456


>At5g19440.1 68418.m02316 cinnamyl-alcohol dehydrogenase, putative
           (CAD) similar to cinnamyl-alcohol dehydrogenase,
           Eucalyptus gunnii [GI:1143445], apple tree, PIR:T16995
          Length = 326

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 344 HASQVVEFLDWLCCHLPLPLRCISPRP 264
           H S++V  L  L  +LPLP RC+   P
Sbjct: 259 HHSEIVNILRELYPNLPLPERCVDENP 285


>At4g38650.1 68417.m05471 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 562

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 44  DGVRFDGVGIELHVADCRYALRRS 115
           DGVR DG+G+E H      AL R+
Sbjct: 400 DGVRMDGIGLEGHFTTPNVALMRA 423


>At1g65680.1 68414.m07455 beta-expansin, putative (EXBP2) similar to
           beta-expansin GI:8118428 from [Oryza sativa]; identical
           to SWISS-PROT:Q9SHY6 putative beta-expansin 2 precursor
           (At-EXPB2)[Arabidopsis thaliana]; beta-expansin gene
           family, PMID:11641069
          Length = 471

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 296 PLPLRCISPRPMNSVISSGMIPAVWSEAGA 207
           PL LR  S     +V++S +IPA W   GA
Sbjct: 237 PLSLRVTSLESGKTVVASNVIPANWQPGGA 266


>At4g38300.1 68417.m05412 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 277

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 44  DGVRFDGVGIELHVADCRYALRRS 115
           DG+R DG+G+E H      AL R+
Sbjct: 212 DGIRMDGIGLEGHFTTPNVALMRA 235


>At4g02030.1 68417.m00273 expressed protein
          Length = 694

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 598 SYDQHKQSHDNGRRSGTASRPDELPQDAGTRSARQTRR 711
           ++ +HK++  NG  + T+SR + L  D   RS  Q  R
Sbjct: 531 TFRKHKRTDSNGSNTTTSSRSNTLHNDKMARSNSQRAR 568


>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 497 HELRCARSPTTTPRHRSISNRLKKRLKSIRRGPEATTNTS 616
           H LR  +    TP+HRS        L++  R PE  +NTS
Sbjct: 159 HPLRTPQHRPRTPQHRSAHQEDAFSLETRPRTPERRSNTS 198


>At4g36680.1 68417.m05204 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat; identical to cDNA membrane-associated
           salt-inducible protein like GI:2632060
          Length = 412

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 398 RTTMLKASDPIPICNLHHTVSGHEASSLAARLNHELRCAR 517
           ++T+ K  DP     ++  VS H AS +++R   EL   R
Sbjct: 37  KSTLRKEHDPDKALKIYANVSDHSASPVSSRYAQELTVRR 76


>At4g29440.1 68417.m04203 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 1090

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 167 SRRELLRAEEPAARPRL---PTTQPESFHY**PSSSDEVKCIEEEGEDDN 307
           S  ++L  E+P++ P     PT+ P S H   PS+  +    + E E+DN
Sbjct: 570 STSQVLEKEKPSSPPTFDDGPTSPPASLHEPEPSAKFDDYDRDSESEEDN 619


>At3g27325.1 68416.m03415 expressed protein
          Length = 1048

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 604 DQHKQSHDNGRRSGTASRPDELPQD 678
           DQ+K+SHD   R G A+   +LP D
Sbjct: 193 DQYKESHDTREREGAAA-SSKLPHD 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,598,108
Number of Sequences: 28952
Number of extensions: 254698
Number of successful extensions: 862
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)