Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00419
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    30   0.32 
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   2.3  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       27   2.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.9  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    26   6.9  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   6.9  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   6.9  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +2

Query: 143 SPILLDDSPDTLTENTPKSVTAAES*EENSRTSTHVTSSDSG 268
           S I+    PD+ +E+TP S + A S    S TST  TS  SG
Sbjct: 223 SSIISAAPPDSASESTPASTSYASS--TTSATSTSTTSGSSG 262


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +1

Query: 76  LTSCDVSHLETTTPDPPPKPYV---FSYTAGRFPGHVDREHTE 195
           L S  V  L   +PDPP  P +    S      P HV R++T+
Sbjct: 444 LPSASVPALGDGSPDPPAAPSIQNSLSVHESEMPPHVTRDYTQ 486


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 61  VLAAGLTSCDVSHLETTTPDPPPKPYVFSYTAGRFPGHVD--REHTEVSDGSG 213
           V+ AG  S  +SH  + T  P  + + F Y A R+   +   REH  + D  G
Sbjct: 107 VIEAGTGSASMSHAISRTVGPLGRLFTFEYHATRYQTALQEFREHEMLIDVGG 159


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 303  LSDVPPEHP--ADSESVALAKDRHFQLYSKIAEEHAQHPHP 419
            L  +  EH   AD ES+ +A+D +  +   +AEE+ +   P
Sbjct: 2561 LQQLSAEHNRHADLESMVMARDDYINVQQPLAEENQEEGSP 2601


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 325 TRLTLNP*PWLKTGTSSYTPRLLKSTPNIHILMKPAFLVNQPPSPKP 465
           T   LNP P     T+   P +   +P+I +  +PA  V  PP  +P
Sbjct: 547 TSQQLNPAP-----TAMPHPNITSPSPSISVTQRPAVNVGPPPYVRP 588


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 372 QLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSEL 485
           +L+ + A   A+HP  Y+T V   SA  AE+T  H  L
Sbjct: 176 RLFIQSAHNIAKHPSLYDTEVRNPSA--AESTNSHVSL 211


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/57 (26%), Positives = 21/57 (36%)
 Frame = +1

Query: 4   HERKRTSNK*TMLCHTLILVLAAGLTSCDVSHLETTTPDPPPKPYVFSYTAGRFPGH 174
           H     SN  +  C      L +   +  +  L+ + P P P    F Y A R  GH
Sbjct: 17  HNNACQSNASSSACRASEDHLVSSFPNDSIIDLQPSRPAPEPPKKKFGYYARRLSGH 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,919
Number of Sequences: 5004
Number of extensions: 50243
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)