Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00419
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0373 + 2783596-2784933 33 0.25
10_08_0797 + 20646091-20646519,20646531-20647460 29 4.1
02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757 29 5.4
10_03_0036 - 7286425-7286463,7286686-7286974,7287306-7288192,728... 28 7.2
03_03_0256 + 15898702-15900420 28 7.2
12_02_1001 - 25162761-25162977,25163060-25163230,25163309-251638... 28 9.5
10_05_0056 + 8635567-8635782,8636275-8637006,8637088-8637531,863... 28 9.5
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 28 9.5
07_03_0113 - 13557496-13557960 28 9.5
06_03_0554 - 22057957-22058014,22058093-22058426,22058446-220589... 28 9.5
04_04_0903 - 29269794-29270141,29270227-29270751 28 9.5
>07_01_0373 + 2783596-2784933
Length = 445
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 315 PPEHPADSESVALAKDRHFQLYSKIAEEHAQHPH-PYETSVPRQSAAVAEA 464
P H A+ +A+A +HF L AE HA+ H ++ +P +AA A A
Sbjct: 291 PAPHLANITPIAMAPAQHFTLTPAAAEHHAEMTHYSFDHFMPVHAAAAAAA 341
>10_08_0797 + 20646091-20646519,20646531-20647460
Length = 452
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 79 TSCDVSHLETTTPDPPPKPYVFSYTAGRFPGHVDREHT 192
TSC +SHL T P P+ TAG H+ EH+
Sbjct: 80 TSCRLSHLATGATAPLPRLNAVRATAGSRVVHLGYEHS 117
>02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757
Length = 397
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +1
Query: 100 LETTTPDPPPKPYVF---SYTAGRFPGHVDREHTEVSDGS 210
L+TT P PPP Y Y G V EH SDG+
Sbjct: 214 LDTTHPHPPPSYYSMDHKEYAYGHATKEVHGEHAFFSDGT 253
>10_03_0036 -
7286425-7286463,7286686-7286974,7287306-7288192,
7288280-7288726,7288805-7288830,7288984-7289512
Length = 738
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 315 PPEHPADSESVALAKDRHFQLY 380
PP+ PA + S A+DRH Q Y
Sbjct: 435 PPKRPASAPSAPPAQDRHAQFY 456
>03_03_0256 + 15898702-15900420
Length = 572
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 270 YVADKEGFHPILSDVPPEHPADSESVALAKDRHFQLYSKIAEEHAQHPHPYETSVP 437
Y AD G H + P P ++A ++ + +L SK E Q P P E P
Sbjct: 124 YAADPSGLHIVGDAQPSAEPDTVYNLAPSEHKRRRLQSKDEEGANQEPLPPEAKNP 179
>12_02_1001 -
25162761-25162977,25163060-25163230,25163309-25163814,
25163827-25164195,25164283-25164729,25164808-25164833,
25164987-25165515
Length = 754
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 315 PPEHPADSESVALAKDRHFQLY 380
PP+ PA + S A+DRH Q Y
Sbjct: 435 PPKRPASAPSAPSAQDRHAQSY 456
>10_05_0056 +
8635567-8635782,8636275-8637006,8637088-8637531,
8637618-8637665,8637706-8638505,8638584-8638754,
8638837-8639125,8639211-8639249,8639355-8639393
Length = 925
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 315 PPEHPADSESVALAKDRHFQLY 380
PP+ PA + LA+DRH Q Y
Sbjct: 552 PPKRPASAPLAPLAQDRHAQSY 573
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 315 PPEHPADSESVALAKDRHFQLY 380
PP+ PA S S A+DRH Q Y
Sbjct: 588 PPKRPASSLSAPPAQDRHAQSY 609
>07_03_0113 - 13557496-13557960
Length = 154
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 315 PPEHPADSESVALAKDRHFQLY 380
PP+ PA + S A+DRH Q Y
Sbjct: 90 PPKRPASAPSAPPAQDRHAQYY 111
>06_03_0554 -
22057957-22058014,22058093-22058426,22058446-22058977,
22059211-22059459,22059551-22059563,22059608-22059942
Length = 506
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 303 LSDVPPEHPADSESVALAKDRHFQLY 380
L PP+ PA + S A+DRH Q Y
Sbjct: 296 LGGSPPKRPASAPSAPPAQDRHAQSY 321
>04_04_0903 - 29269794-29270141,29270227-29270751
Length = 290
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 467 GGFGDGG*LTRNAGFIRMWMLGVLFSNLG 381
GG GDGG + AG + W L + + LG
Sbjct: 194 GGAGDGGGVVAEAGEVSKWKLALFGAALG 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,992,020
Number of Sequences: 37544
Number of extensions: 396138
Number of successful extensions: 1692
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1686
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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