Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00419
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.79 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   1.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   1.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 243 PTSQVRTVDYVADKEGFHPILSDVPPEHPADSE 341
           P  Q  ++ YVAD+ GF    S +P   P   E
Sbjct: 80  PDGQQVSITYVADENGFQVQGSHIPTAPPIPPE 112


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 223 GKFAYVDPRHKFGQWTTWLTRKASIRY*ATCLQSTRLTLNP 345
           GKF +  P+    +   W+   ++ ++   CLQ T+L +NP
Sbjct: 59  GKFRFKAPQ----KIPAWIGELSATKFGFPCLQYTQLPVNP 95


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 223 GKFAYVDPRHKFGQWTTWLTRKASIRY*ATCLQSTRLTLNP 345
           GKF +  P+    +   W+   ++ ++   CLQ T+L +NP
Sbjct: 59  GKFRFKAPQ----KIPAWIGELSATKFGFPCLQYTQLPVNP 95


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 232 AYVDPRHKFGQWTTWLTRKASIRY 303
           ++ D + KF +W + ++R   +RY
Sbjct: 445 SFEDAKEKFRRWVSTMSRPFEVRY 468


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 318 PEHPADSESVALAKDRHFQLYSKIAEEHAQHPHPYETSV 434
           P+H   S S + A      +Y  ++   A H H  + +V
Sbjct: 69  PQHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQAV 107


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +2

Query: 95  LTSRRPRLTLHRSPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTST 244
           +T  + R+ L +SP C P     + +++   +  S   + + +EN  +ST
Sbjct: 197 ITPAKKRIKLEQSPLCPPAPRLTNSNSIKHESDNS-DYSHTTDENRHSST 245


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +3

Query: 408 HPHPYETSVPRQSAAVAEATL-KHSELFRVI 497
           HPHP ET  P+    +  A     +EL  ++
Sbjct: 466 HPHPPETPGPQVETILQNACFCARNELMMIL 496


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,308
Number of Sequences: 438
Number of extensions: 3908
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)