Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00418
         (759 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    24   1.5  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    24   1.5  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   3.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   3.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   4.6  

>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 318 FNCFYI*KLLHN 283
           FNCF++ KLL+N
Sbjct: 367 FNCFWVMKLLYN 378


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 604 IIEFLKKLQNCIKSIN*IQKNTKNSLNIILRQIRINDLM 488
           +IEF  KLQN    IN   + T++ +++ +R + +   +
Sbjct: 109 LIEFDVKLQNVSLIINYENQRTRSRIHLFVRYVFVTSYL 147


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 547 KNTKNSLNIILRQIRINDLMDRKIDPATVI 458
           K+ +NS NI L  + + DLM   +   TV+
Sbjct: 97  KDMRNSTNIFLVNLSVADLMVLLVCTPTVL 126


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 547 KNTKNSLNIILRQIRINDLMDRKIDPATVI 458
           K+ +NS NI L  + + DLM   +   TV+
Sbjct: 97  KDMRNSTNIFLVNLSVADLMVLLVCTPTVL 126


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = -1

Query: 195 GAHVGCPSG*LSRGFIEPHV-HSVRIPRLH 109
           G H G   G    G  EPHV H   +  LH
Sbjct: 11  GIHPGYMDGGAGAGLYEPHVAHRPGLQGLH 40


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,931
Number of Sequences: 336
Number of extensions: 3797
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)