Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00418
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate N-acetyltransfera...    31   0.18 
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    28   1.7  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   3.8  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   5.1  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   8.9  

>SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate
           N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 10  VTVSLLAQELGCYKMSLDCKDKLIKFYETLG 102
           +T+  LA  L  YK+ LDC D  + FYE  G
Sbjct: 64  LTLIKLAFSLNSYKVILDCSDSNVGFYEKCG 94


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 10  VTVSLLAQELGCYKMSLDCKDKLIKFYETLGYKMEPGNSNAMNMRFDEP 156
           V V  LA  LGCY +++  + +++      GYK       +++  F+ P
Sbjct: 180 VLVEFLATRLGCYLLNISSQSQVLDLLAFSGYKFVGLILTSLSKLFEMP 228


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = +3

Query: 579 CNFFRNSIIIADNNC-FE---D*KR*FVNYFLMG-CPIGHGC 689
           C FFRN    A  NC F    + +R    YFL G C  G  C
Sbjct: 47  CKFFRNGTCTAGENCPFSHSLETERPICKYFLKGNCKFGPKC 88


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 485 IHQIIDSYLSQYNVQRIFGIFLYLIY*FNA 574
           +H I +  +   +VQRIF +F  L++ FNA
Sbjct: 380 LHDIENGRIDTEHVQRIFRLFDALLFYFNA 409


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 417 AFYVDCVACLVVCVITVAGSIFLSIKSLIRICR-NIMFKEFLVFFCI*FIDLMQFCNFFR 593
           A Y  C+A L V +   A  +F     ++R C  +I F++  V F      L+    FF 
Sbjct: 168 AIYACCMA-LTVFINPNALLLFFPSYLILRKCNSSIKFRQIFVVFLFYLAGLIITSGFFL 226

Query: 594 NSI 602
           NS+
Sbjct: 227 NSL 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,541
Number of Sequences: 5004
Number of extensions: 62613
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)