Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00418
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0531 + 29811356-29811856                                         33   0.33 
05_05_0016 - 21542300-21542886,21542956-21543286,21543310-215434...    28   9.3  

>02_05_0531 + 29811356-29811856
          Length = 166

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 25  LAQELGCYKMSLDCKDKLIKFYETLGY 105
           +A+E GCYK+ LDC  +L  +Y   G+
Sbjct: 129 IAKEAGCYKVILDCTPELRAYYAKCGF 155


>05_05_0016 -
           21542300-21542886,21542956-21543286,21543310-21543419,
           21543526-21544069,21544190-21544345
          Length = 575

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 432 NQHKKRFFFF*STNKHQNQFSKFKTRLDF*EHSK 331
           N H + F +F S +++  Q SKF  RL+F  HSK
Sbjct: 82  NPHAEDFAYFHSISRYTKQNSKF-GRLNFYPHSK 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,634,085
Number of Sequences: 37544
Number of extensions: 330578
Number of successful extensions: 548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)