Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00418
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AY455927-3|AAR26304.1|  347|Caenorhabditis elegans phosphoglucos...    44   1e-04
Z71178-10|CAA94884.1|  165|Caenorhabditis elegans Hypothetical p...    35   0.055
AB017628-1|BAA36497.1|  165|Caenorhabditis elegans acetyltransfe...    35   0.055
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    28   8.3  

>Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical
           protein T23G11.2 protein.
          Length = 347

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = +1

Query: 25  LAQELGCYKMSLDCKDKLIKFYETLGYKMEPGNSNAMNMRFDEP 156
           +A+ LG YK+SL+CK +LI FY   GY     N + M  RFD+P
Sbjct: 301 MARSLGVYKLSLECKTELIPFYNKFGYN---ENIHFMVQRFDKP 341



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 21/50 (42%), Positives = 32/50 (64%)
 Frame = +1

Query: 4   HEVTVSLLAQELGCYKMSLDCKDKLIKFYETLGYKMEPGNSNAMNMRFDE 153
           +EV V + A+ +G YK+SL+CK +LI FY   GY     N + ++ RF+E
Sbjct: 119 NEVLVEM-AKTIGVYKLSLECKTELIPFYNKFGYSK---NLHFLDQRFEE 164


>AY455927-3|AAR26304.1|  347|Caenorhabditis elegans
           phosphoglucosamine acetyltransferaseprotein.
          Length = 347

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = +1

Query: 25  LAQELGCYKMSLDCKDKLIKFYETLGYKMEPGNSNAMNMRFDEP 156
           +A+ LG YK+SL+CK +LI FY   GY     N + M  RFD+P
Sbjct: 301 MARSLGVYKLSLECKTELIPFYNKFGYN---ENIHFMVQRFDKP 341



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 21/50 (42%), Positives = 32/50 (64%)
 Frame = +1

Query: 4   HEVTVSLLAQELGCYKMSLDCKDKLIKFYETLGYKMEPGNSNAMNMRFDE 153
           +EV V + A+ +G YK+SL+CK +LI FY   GY     N + ++ RF+E
Sbjct: 119 NEVLVEM-AKTIGVYKLSLECKTELIPFYNKFGYSK---NLHFLDQRFEE 164


>Z71178-10|CAA94884.1|  165|Caenorhabditis elegans Hypothetical
           protein B0024.12 protein.
          Length = 165

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 13  TVSLLAQELGCYKMSLDCKDKLIKFYETLGYKMEPGNSNAMNMRF 147
           T+  L + LG YK+SL+C  +L+ FY   G++    + N M  RF
Sbjct: 124 TLVSLGKSLGVYKISLECVPELLPFYSQFGFQ---DDCNFMTQRF 165


>AB017628-1|BAA36497.1|  165|Caenorhabditis elegans
           acetyltransferase protein.
          Length = 165

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 13  TVSLLAQELGCYKMSLDCKDKLIKFYETLGYKMEPGNSNAMNMRF 147
           T+  L + LG YK+SL+C  +L+ FY   G++    + N M  RF
Sbjct: 124 TLVSLGKSLGVYKISLECVPELLPFYSQFGFQ---DDCNFMTQRF 165


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            b protein.
          Length = 978

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 426  VDCVACLVVCVITVAGSIFLSIKSLIRICRNIMFKEFLVFFC 551
            V C++ L        G   +     +++C N  FK F+  FC
Sbjct: 936  VSCISMLFESPWPTTGENLVMNNGYLQVCNNFYFKIFMFIFC 977


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,561,477
Number of Sequences: 27780
Number of extensions: 345023
Number of successful extensions: 745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)