Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00418
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.027
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   7.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 0.027
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 456 HKQPSRQHNQHKKRFFFF*STNKHQNQFSK 367
           H+  S +H  +++RF +F S   HQ+QF++
Sbjct: 107 HQDSSSEHASNQERFGYFSSLKDHQHQFAE 136


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 308 SIFENYYITENTI*LFLE-WNDDV 240
           +IF+  +ITEN + L LE W D V
Sbjct: 176 AIFDGDFITENNLPLGLEVWRDKV 199


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 277 IQFDYFSSGMMMYEL 233
           I  DY+S G++M+EL
Sbjct: 544 ISADYWSLGVLMFEL 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,811
Number of Sequences: 438
Number of extensions: 4350
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)