Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00417
(781 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 73 3e-13
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 33 0.20
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 33 0.34
SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17) 31 0.79
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 31 0.79
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 2.4
SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 29 4.2
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_23595| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05) 29 5.6
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) 28 7.4
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 28 7.4
SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3) 28 9.8
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 28 9.8
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 28 9.8
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 72.9 bits (171), Expect = 3e-13
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +1
Query: 241 PEVFID--GIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 414
PEV D + FD+S+LKH E QEKNPLP KD I E + + ++ FD +KLKH +
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTESTETR--AEVKTFDHSKLKHVQ 731
Query: 415 TCEKNSLPTKDVIEQEKSA 471
T EKN LP I QEK++
Sbjct: 732 TEEKNPLPDAKTIAQEKAS 750
Score = 71.7 bits (168), Expect = 6e-13
Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Frame = +1
Query: 253 IDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFDPTKLKHTETCEK 426
+ + KFD++ LKH +T+EKN LP + I+ E + ++F + E +F+ +KL+H ET EK
Sbjct: 411 VSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEK 470
Query: 427 NSLPTKDVIEQEK 465
N+LPTKD I EK
Sbjct: 471 NTLPTKDTIADEK 483
Score = 70.1 bits (164), Expect = 2e-12
Identities = 37/70 (52%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Frame = +1
Query: 259 GIEKFDSSQLKHTETQEKNPLPDKDAIEAE--KEKNKFLNGIENFDPTKLKHTETCEKNS 432
G+E F ++LKH ET EKNPLPD I AE E + + FD +KLKH ET EK
Sbjct: 490 GVEVFQKNKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVV 549
Query: 433 LPTKDVIEQE 462
+PTKDVIE E
Sbjct: 550 MPTKDVIEAE 559
Score = 67.3 bits (157), Expect = 1e-11
Identities = 37/76 (48%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Frame = +1
Query: 241 PEVFIDGIE--KFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 414
P+ F D E F+ S+L+H ET+EKN LP KD I EK F +G+E F KLKH E
Sbjct: 445 PDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEKRTAPF-SGVEVFQKNKLKHVE 503
Query: 415 TCEKNSLPTKDVIEQE 462
T EKN LP I E
Sbjct: 504 TLEKNPLPDAQNIRAE 519
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Frame = +1
Query: 262 IEKFDSSQLKHTETQEKNPLPDKDAIEAEK-EKNK-FLNGIENFDPTKLKHTETCEKNSL 435
++ FD S+LKH TQEKNPLP + E KNK + + +FD TKLKH T EK+ +
Sbjct: 567 VKSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIM 626
Query: 436 PTKDVIEQE 462
P+++ I++E
Sbjct: 627 PSQEDIKEE 635
Score = 58.4 bits (135), Expect = 6e-09
Identities = 27/67 (40%), Positives = 45/67 (67%)
Frame = +1
Query: 262 IEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPT 441
+ FD ++LKH TQEK+ +P ++ I+ E ++ +++FD +KLKH ET EKN LP+
Sbjct: 607 VASFDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPS 664
Query: 442 KDVIEQE 462
V+++E
Sbjct: 665 AAVLKEE 671
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +2
Query: 116 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 235
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 31.5 bits (68), Expect = 0.79
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 116 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 235
+PK D +S++ F+ + L+ V T EK ++PS ED+ E
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 104 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKS 250
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEAS 382
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 32.7 bits (71), Expect = 0.34
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +1
Query: 271 FDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDV 450
+D Q K E PD+D +E E+E NG+E+ D K + + PT DV
Sbjct: 839 YDVKQRKRLEQHASYEAPDEDEMEIERE---LQNGLESGDEDDTKADAQRSETNSPTLDV 895
Query: 451 IEQE 462
Q+
Sbjct: 896 ETQQ 899
>SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)
Length = 1178
Score = 31.5 bits (68), Expect = 0.79
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 86 SVSDTPSLKDLPKVAT--DLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLST 259
S+ ++P+ DLP++A+ +++S + G + T P ATE T + +T
Sbjct: 864 SIVNSPNTNDLPQLASSGNIESPINGNQQQIVDSSRTTRGETEPRPAQTATENTTRGNAT 923
Query: 260 VSRSLI 277
RSLI
Sbjct: 924 RGRSLI 929
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 34 ESSIPFLIKNILIQNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 168
E S+PF N QN ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 86 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 232
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +1
Query: 253 IDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEK-----EKNKFLNGIENFDPTKLKHTET 417
+DG K+ SSQ+ ET++ K ++E+ EK N +N + TK +H++
Sbjct: 163 LDG--KYSSSQIDKLETKQAIKSKKKKRRKSEEKELLGEKVDQFNSKKNLNRTKERHSKK 220
Query: 418 CEKNSLPTKDVIEQEK 465
EKN Q+K
Sbjct: 221 MEKNRQDNSKTRSQQK 236
>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 289 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSL 435
+HTE + +P P K I+ E +++ + I+ KH+ +CE+ +
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCERTHI 260
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 107 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE-KTQKSLSTVS 265
L DL +V +LKS+ EG CL D++ + DV E + KS ++S
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKEHENLKSAVSIS 1177
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 543 VRSICVVHYKFYFCFCTMATLPG 611
V IC VH FY+C C +++ G
Sbjct: 58 VLRICSVHLDFYYCTCVWSSMAG 80
>SB_23595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 313 NPLPDKDAIEAEKEKNK---FLNGIENFDPTKLKHTETCEKNSLPTKDVIEQ 459
N LPD + E+++ K ++G + + K CE NSLP K ++Q
Sbjct: 171 NNLPDSTCTQKERQRLKSERVVHGEAKHEQDQGKCPNNCEGNSLPQKAYVKQ 222
>SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)
Length = 492
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 236 SQWRRLQQTEAQSFHWCRRHGDSWC*SLRADSSGLWRPW 120
S WRRLQ+ A S + + D +L A+ G W PW
Sbjct: 419 SLWRRLQELNATSLEYRLQPEDPRSIAL-AERLGRWEPW 456
>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
Length = 385
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 256 DGIEKFDSSQLKHTETQEKNPLP 324
D +E+F S +H T +KNPLP
Sbjct: 206 DRLEQFSSQTGRHINTTKKNPLP 228
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 51 PHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTP 191
P + + E P P + L P T+ P+ V +ASTP S +P
Sbjct: 517 PRNSFAEYEKPLPTLPLSPTNTTTGRPRLSTVPPEASTPTDSFPKSP 563
>SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3)
Length = 866
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +1
Query: 253 IDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 363
+D +E FD++ L HT+ N +++ +E +K++
Sbjct: 72 LDNLEGFDNADLDHTDQSGINVKSEQEFVEVHLQKSR 108
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 298 ETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQEKSA 471
+T E++P DK + L+G+ +FD K +H + K IEQ+ ++
Sbjct: 261 KTIEQDPTSDKSYKALRDTTHDLLDGLRDFDQAKEEHAKLIPKYHKIMIKTIEQDPTS 318
>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
Length = 590
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 276 FEPAEAHRDSGEEPASGQRRYRSGEG 353
FEP E H DSG+E Y EG
Sbjct: 266 FEPMEIHDDSGDEDVDSDDDYDDREG 291
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -2
Query: 195 SLVSTSRRQLVLKPSS*LFRSVATLGRSFREGVSLTEQAILNQYIFDEEGDRRFVHSATL 16
SLV TS KP L+ VA +GR F V+ T+ + + EEG + H L
Sbjct: 12 SLVGTSCSNSQEKPIQRLYNVVAVVGRHFTYRVTPTDGS--KNFKITEEGKKTLPHWLAL 69
Query: 15 SD 10
+
Sbjct: 70 DE 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,035,565
Number of Sequences: 59808
Number of extensions: 487568
Number of successful extensions: 1481
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -