Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00417
(781 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 58 7e-09
AC024211-1|AAF36065.1| 252|Caenorhabditis elegans Hypothetical ... 29 3.7
Z46787-6|CAA86744.1| 392|Caenorhabditis elegans Hypothetical pr... 29 4.9
AC006684-10|AAF39962.2| 665|Caenorhabditis elegans Hypothetical... 29 4.9
Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF022981-2|AAG24200.1| 236|Caenorhabditis elegans Hypothetical ... 28 6.5
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 28 8.6
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 58.0 bits (134), Expect = 7e-09
Identities = 31/72 (43%), Positives = 42/72 (58%)
Frame = +1
Query: 253 IDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNS 432
I IE FDS++L T +EK LP D I+ EK+ + + I NF LK TET EKN
Sbjct: 51 IHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNV 110
Query: 433 LPTKDVIEQEKS 468
LP+ + +EK+
Sbjct: 111 LPSPTDVAREKT 122
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/61 (47%), Positives = 39/61 (63%)
Frame = +1
Query: 283 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQE 462
+LK ET EKN LP K+ + EK+ + ++ IE+FD TKL T EK LP+ D I+QE
Sbjct: 23 ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82
Query: 463 K 465
K
Sbjct: 83 K 83
Score = 35.9 bits (79), Expect = 0.032
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +2
Query: 101 PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLSTVSRSL 274
PS D+ K +L ++ F + L+ +T EK VLPS DVA EKT + ++ +S
Sbjct: 74 PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQMAASFDKSA 133
Query: 275 I 277
+
Sbjct: 134 L 134
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 146 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLS 256
++E F+++ L EKIVLPSA+D+ EK L+
Sbjct: 53 EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELT 89
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +2
Query: 104 SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEK 238
++ +LPK+ +L + EG L+ V+T EK VLP+ EDVA EK
Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEK 45
>AC024211-1|AAF36065.1| 252|Caenorhabditis elegans Hypothetical
protein Y76B12C.4 protein.
Length = 252
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +1
Query: 235 EDPEVFIDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 414
E+ E + EK + + +T EKN DK+ EAEKE+ K + K K
Sbjct: 61 EEKESEKEAAEKEKEKEKEKEKTHEKNEA-DKEEKEAEKEEEKEEKPPKEVTEEKEKEK- 118
Query: 415 TCEKNSLPTKDVIEQ 459
E+ TKD +E+
Sbjct: 119 --EREKTKTKDELEE 131
>Z46787-6|CAA86744.1| 392|Caenorhabditis elegans Hypothetical
protein C16C10.6 protein.
Length = 392
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Frame = +1
Query: 235 EDPEVFIDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEK-------NKFLNGIENFDP 393
+D EVF+ G + ++K QE D +K+K LN + DP
Sbjct: 137 DDKEVFVTGAYRKQQEEVKKHREQEAEEAAFNDMTSVQKQKLWEIGMGRTLLNDLAR-DP 195
Query: 394 TKLKHTETCEKNSLPTKDVIEQ 459
T +K + +KN +D E+
Sbjct: 196 TAIKQRKKEQKNVRKREDSDEE 217
>AC006684-10|AAF39962.2| 665|Caenorhabditis elegans Hypothetical
protein T02H6.2 protein.
Length = 665
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +1
Query: 268 KFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKD 447
K DSS++K ++T NP D I +++ + + F K C LP D
Sbjct: 551 KLDSSKVKPSQTSSPNPY--TDTILSDEHLTQLARDLSKFKSNLAK----CFGTKLPADD 604
Query: 448 VIEQEK 465
V EK
Sbjct: 605 VTSDEK 610
>Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical
protein C33G3.6 protein.
Length = 624
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 262 IEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPT 441
IE+F K T ++N ++ E++ E+ +LN I +F + H LP+
Sbjct: 98 IEQFFGENQKSTRNSDQNAKNHEEDPESDDEETAYLNLIRSFKKEESMHDLKNASGKLPS 157
Query: 442 KD 447
+
Sbjct: 158 SN 159
>AF022981-2|AAG24200.1| 236|Caenorhabditis elegans Hypothetical
protein W03F9.2a protein.
Length = 236
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 289 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFD 390
KHTET+++ P +K A+K N L +E N+D
Sbjct: 192 KHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 283 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTK--LKHTETCEKNSLPTKDVIE 456
QL+ + Q+K + + + + E K ++ +EN P + L T KNS K++
Sbjct: 1194 QLEAKKDQDKETIENSEDAKKETVMEKLVSLVENILPVEAVLPSDSTVTKNSEDKKELET 1253
Query: 457 QEKSA 471
QE S+
Sbjct: 1254 QELSS 1258
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 283 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTK--LKHTETCEKNSLPTKDVIE 456
QL+ + Q+K + + + + E K ++ +EN P + L T KNS K++
Sbjct: 1194 QLEAKKDQDKETIENSEDAKKETVMEKLVSLVENILPVEAVLPSDSTVTKNSEDKKELET 1253
Query: 457 QEKSA 471
QE S+
Sbjct: 1254 QELSS 1258
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 283 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTK--LKHTETCEKNSLPTKDVIE 456
QL+ + Q+K + + + + E K ++ +EN P + L T KNS K++
Sbjct: 1194 QLEAKKDQDKETIENSEDAKKETVMEKLVSLVENILPVEAVLPSDSTVTKNSEDKKELET 1253
Query: 457 QEKSA 471
QE S+
Sbjct: 1254 QELSS 1258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,944,477
Number of Sequences: 27780
Number of extensions: 357316
Number of successful extensions: 1172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -