Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00417
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 33 0.21
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 31 0.86
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 30 1.5
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 3.5
At5g42490.1 68418.m05172 kinesin motor family protein contains P... 29 3.5
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 29 3.5
At1g23230.1 68414.m02906 expressed protein 29 3.5
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 29 4.6
At3g57780.1 68416.m06436 expressed protein 28 6.0
At3g28770.1 68416.m03591 expressed protein 28 8.0
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 28 8.0
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = +1
Query: 277 SSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIE 456
S L H E EK+ + + KEK E TKLK TE+ KNS+ K +E
Sbjct: 794 SDLLSHIECLEKD-IGSLSSSSLAKEKENLRKDFEK-TKTKLKDTESKLKNSMQDKTKLE 851
Query: 457 QEKSA 471
EK++
Sbjct: 852 AEKAS 856
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 31.1 bits (67), Expect = 0.86
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +2
Query: 17 RVAECTNLLSPSSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 196
R+A C P ++ F + S S + SL+D+ ++ +LK L+G + VDTN
Sbjct: 513 RIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN- 569
Query: 197 KIVLPSAEDVATEK---TQKSLSTVSR 268
AED A E+ +K++ST+++
Sbjct: 570 ----LDAEDRAAERKAEVEKAVSTLAQ 592
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 283 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNSLPTKDVIEQ 459
Q+K + +E+N K+ +E + + K +E + +LK T E+N ++ IE
Sbjct: 778 QIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETREKEENKKKLREAIEL 837
Query: 460 EK 465
E+
Sbjct: 838 EE 839
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 265 EKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNSLPT 441
+K + +LK T +E+N ++AIE E+++ + + E + +LK E+ +
Sbjct: 811 QKENERRLKETREKEENKKKLREAIELEEKEKRLIEAFERAEIERRLKEDLEQEEMRMRL 870
Query: 442 KDVIEQEK 465
++ E+E+
Sbjct: 871 QEAKERER 878
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 295 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 390
TE E + LPD ++ +K K + +N + N+D
Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43
>At5g42490.1 68418.m05172 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1087
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +1
Query: 262 IEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPT 441
+E +S + + E Q KN ++ + K+ + LN EN ++ + TE CE NSLP
Sbjct: 563 VEAQESQESVNEEEQMKNE--ERKMSPSTKQAEQCLNKEENAQ-SEQQSTEDCELNSLPI 619
Query: 442 KDVIE 456
+ E
Sbjct: 620 NNQSE 624
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Frame = -3
Query: 632 GCCTPPLPRQCCH-CTKTKIKLVMDD--ANRSDLHQY*NTAILANTFASNCYKVVVQADF 462
G C P+ + C+K+ ++ + AN S ++ L++ C++ ++ DF
Sbjct: 392 GACVLPIGSYTFYKCSKSNCSFILHEKCANISKKKRH----FLSSEPLILCFESIIDDDF 447
Query: 461 SCSMT--SFVGSEFFSHVSVCFSLVGSKFSMPF 369
C F F+S V F L+ S +MPF
Sbjct: 448 LCRACYQMFCEGFFYSSKGVNFDLICSSITMPF 480
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 445 PLWGASSSRTFPCASA*WDRSSRC-RSGICSFPSP 344
PL+G + + P S W+R+ RC R I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 86 SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 250
S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E S
Sbjct: 78 SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 274 DSSQLKHTETQEK-NPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCE 423
DSS+ TE +E N L D E EKE++K L+ I + + ETCE
Sbjct: 72 DSSE--KTEKEETINGLACDDEDEEEKEESKELDAIAHEKTDSVSSPETCE 120
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 289 KHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKD 447
K +E EK + KDA E + NK L+ EN D K + E +++ +KD
Sbjct: 780 KESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKEDKEESKD 833
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +1
Query: 289 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQE 462
K +E P P+ + + EK+ FLNG K KN +P K I +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,032,628
Number of Sequences: 28952
Number of extensions: 333061
Number of successful extensions: 1172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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