Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00416
         (777 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   3.6  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   6.3  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   8.3  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 69  GSPITSLHSASAKTPSGS 16
           G P+ SLHS+ A  P+G+
Sbjct: 48  GLPVDSLHSSMAGYPAGN 65


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 685 VWLAVTNTVWWQSVKFGSVTLVWVWVCNT 771
           +WL +T  ++  S K  S   +W W CNT
Sbjct: 11  IWLYLT-AIYVSSRKSDSG--IWYWQCNT 36


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 41  AECRLVIGDPTSSFWAYFILRSIADIW 121
           A C   I     + WA+  +R +A +W
Sbjct: 246 ASCYATIDSQWLAHWAFAPIRWVAKLW 272


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 310 AIFMILAALILVFDSHMPLST 372
           AIF +   L+L+FD+++ +S+
Sbjct: 118 AIFNLYMVLLLLFDAYLWISS 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,968
Number of Sequences: 336
Number of extensions: 4547
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)