Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00416
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    37   0.004
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    30   0.43 
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   1.7  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    27   2.3  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.2  

>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
 Frame = +3

Query: 213 PSVH-WDWLSSRRWPTSR*SNARHPISCSVYSTRNLHDIGCLNISI*QSHATI--DAGMV 383
           PS+  WD ++ R+ PT + SN +  I+C   ++ N      L+  +   H  I   +   
Sbjct: 228 PSIKVWDLVAGRQTPTKKLSNHQKSITCLAMNSENTR---LLSGGL-DGHVKIYNISDWK 283

Query: 384 VAHGDRSVGPAHECGAPVWSRDCCSFCCGSSTGHSVERHRRILPWT 521
           V HG +  GP    G    S D C+   G S G   +R RRI   T
Sbjct: 284 VVHGMKYSGPILSMGL---SPDSCNLVVGMSNGTLSQRTRRITKQT 326


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +3

Query: 84  GPILFSDLSQTYGRLPH*LYSVQRV 158
           G +LF+ LS+ YGRLP  LYSV  V
Sbjct: 160 GSVLFAPLSEVYGRLP--LYSVTLV 182


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 522  VEEMNGTYTEVGLTLTAGALPAVPALWWAEA 614
            +EE  G +  +GLT +   L A+   WW EA
Sbjct: 1738 LEEKLGIHDNIGLTHSLPVLKALVKTWWNEA 1768


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 84  GPILFSDLSQTYGRLP 131
           GP++FS LS+ YGR P
Sbjct: 91  GPLIFSPLSELYGRRP 106


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -3

Query: 577 APAVSVNPTSVYVPFIS--STVHGRMRRCRSTECPVELPQQKLQQSRLH 437
           AP    NP  V+       S+   R R C S  CP  L     QQ+RLH
Sbjct: 360 APETEYNPHGVFTLLTECYSSTCSRNRLCYSISCPRRLE----QQARLH 404


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
 Frame = +1

Query: 331  ALILVFDSHMPLSTPE---WWWH 390
            A++   D   PL+T E   WWWH
Sbjct: 1681 AILKAMDLDKPLATIEHAQWWWH 1703


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,426,286
Number of Sequences: 5004
Number of extensions: 72993
Number of successful extensions: 211
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)