Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00416
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0281 - 20334578-20334961,20335859-20336005,20336088-203361... 33 0.25
12_02_0427 + 18973358-18973364,18974195-18974300,18974763-189748... 32 0.44
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63... 32 0.44
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106 31 1.3
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 31 1.3
11_06_0669 - 26084906-26087350 30 1.8
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 29 3.1
02_05_0870 - 32354117-32354416 29 4.1
01_03_0220 - 13905808-13905831,13906694-13906885,13906960-139075... 29 4.1
04_04_1447 + 33675146-33675922 28 7.2
04_04_0193 + 23482177-23484963 28 9.5
03_05_1131 - 30606808-30607042,30607141-30607664 28 9.5
>01_05_0281 -
20334578-20334961,20335859-20336005,20336088-20336141,
20336391-20336555,20337331-20337855
Length = 424
Score = 33.1 bits (72), Expect = 0.25
Identities = 23/69 (33%), Positives = 27/69 (39%)
Frame = -2
Query: 608 GPPERRHGWKCARGQRQPHFSICAVHLLNGPRKNASMPLHRMPSRATTTKTAAVSAPYRR 429
GPPER GW+ G V L AS P +P R TT ++ RR
Sbjct: 97 GPPERPRGWRPRPGPNDTAAGDAGVQLWASSAGGASCPEGSVPIRRTTEADVLRASSVRR 156
Query: 428 TTFMGRANT 402
GRA T
Sbjct: 157 ---FGRAPT 162
>12_02_0427 +
18973358-18973364,18974195-18974300,18974763-18974855,
18974978-18975173,18975362-18975540,18975882-18976135,
18976378-18976538,18976633-18976800
Length = 387
Score = 32.3 bits (70), Expect = 0.44
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +1
Query: 289 LVPFILHAIFMILAAL----ILVFDSHMPLSTPEWWWHTATGVLALPMNVVRRYGAETAA 456
++PFILH FM A + V + S P +W A+ +L P + +R+G A
Sbjct: 311 VLPFILHLAFMTFTAFFVMHVQVSTRFLSASPPIYW--AASHILVSPSS-SKRWGNIICA 367
Query: 457 VFVVVALLGIL 489
F+ LLG L
Sbjct: 368 YFIAYILLGSL 378
>06_01_0079 -
633595-633985,634346-634543,634864-635036,635355-635599,
635683-635860,636291-636473,636769-636873,637709-637846,
637933-638925
Length = 867
Score = 32.3 bits (70), Expect = 0.44
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = -1
Query: 615 VLRPTRAPARLEVRPRSASTPLQYMCRSSPQRSTEECVDAAPQNAQ*SYHNKNCSSLGSI 436
V+RP P + + P + +RS+E VD+APQN S + +C S+
Sbjct: 83 VVRPVFMPPVHRKQDAHRAEPPPVAAQGRRRRSSES-VDSAPQNEGFSDDDDSC-SVSQE 140
Query: 435 PAHHIHGQ 412
AH+ HGQ
Sbjct: 141 SAHNFHGQ 148
>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
Length = 427
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 298 FILHAIFMILAALILVFDSH--MPLSTPEWWWHTATGVLALPMNVVRRYGAETAAVFVVV 471
FI AI +LA + + + L+T + A G+L P ++V+ GA++ VF V
Sbjct: 107 FIFPAIHTVLAQWVPPQERSRSVSLTTSGMYLGAAGGMLFFP-SLVKHMGAQS--VFFVE 163
Query: 472 ALLGILWSGI 501
A+LG+ WS I
Sbjct: 164 AVLGVAWSVI 173
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 30.7 bits (66), Expect = 1.3
Identities = 33/115 (28%), Positives = 42/115 (36%), Gaps = 3/115 (2%)
Frame = -3
Query: 694 LAKPVYRSP*N---VKAKMNTLECPM*STSASAHQSAGTAGSAPAVSVNPTSVYVPFISS 524
L P + P N V + + CP+ S + S A SAPA PT V
Sbjct: 37 LPDPAHTGPINGATVIERARGVTCPVASRAKSDISVANAEESAPATGAAPTPV------- 89
Query: 523 TVHGRMRRCRSTECPVELPQQKLQQSRLHTGAPHSWAGPTLLSPCATTIPASIVA 359
H R RS P L Q+ T AP GP + P A+ P+ A
Sbjct: 90 ANHQNSRPTRSAYVPPHL----RGQAPTTTAAPAPAPGPAAVQPSASVQPSGYAA 140
>11_06_0669 - 26084906-26087350
Length = 814
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 444 RDCCSFCCGSSTGHSVERHRRILPWTVEEMNGTYTEVGLTLTA 572
R C ++C H +ERH I W E T TEVGL + A
Sbjct: 324 RRCFAYCSIFPRRHRLERHELINLWVAEGFI-TTTEVGLEMEA 365
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/94 (24%), Positives = 42/94 (44%)
Frame = -3
Query: 682 VYRSP*NVKAKMNTLECPM*STSASAHQSAGTAGSAPAVSVNPTSVYVPFISSTVHGRMR 503
VY++ K+ +T+ C + H ++G + ++ PTS++ PF+ + GR
Sbjct: 56 VYKA--KTKSNDSTIRC-IWGKVTRPHGNSGVVRAKFRSNLPPTSMFWPFLMFLL-GRYG 111
Query: 502 RCRSTECPVELPQQKLQQSRLHTGAPHSWAGPTL 401
+ +PQQ L+ S+ SW P L
Sbjct: 112 GAGQEGPRLHVPQQHLKASKESQSRSGSWPHPNL 145
>02_05_0870 - 32354117-32354416
Length = 99
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 432 PVWSRDCCSFCCGSSTGHSVERH 500
P+W +D C F C STG+ +H
Sbjct: 29 PIWFKDRCHFVCFLSTGYDGFKH 51
>01_03_0220 -
13905808-13905831,13906694-13906885,13906960-13907519,
13910007-13910187
Length = 318
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -1
Query: 690 PNRCIEVRKM*KLR*IH*SVQCSLQVLRPTRAPARLEVRPRSASTP 553
PN C E L I S+ CS Q+L+P A +P S TP
Sbjct: 268 PNYCGEFDNAGALLSIDESLMCSFQILKPNDTGAPHSRKPTSNKTP 313
>04_04_1447 + 33675146-33675922
Length = 258
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 375 GMVVAHGDRSVGPAHECGAPVWSRDCCSFC 464
G+++ GD S ++CG VW RD S C
Sbjct: 76 GLLLCRGDISRAACYDCGTSVW-RDAGSAC 104
>04_04_0193 + 23482177-23484963
Length = 928
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 491 HRMPSRATTTKTAAVSAPYRRTTFMGRANTPVAVC 387
+R+ RA + AVS +R+TF A+ PV C
Sbjct: 95 YRLSKRADEARAEAVSLVEQRSTFQKVADAPVFAC 129
>03_05_1131 - 30606808-30607042,30607141-30607664
Length = 252
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 616 SASAHQSAGTAGSAPAVSVNPTSVYVPFISSTVHGRM 506
++ +HQ T+ APA + P +YV F S H R+
Sbjct: 23 ASHSHQRERTSIPAPAAAPRPVRIYVVFYSMYGHVRL 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,879,877
Number of Sequences: 37544
Number of extensions: 553023
Number of successful extensions: 1800
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1799
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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