Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00416
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41085| Best HMM Match : Auxin_repressed (HMM E-Value=9)             30   1.8  
SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_30903| Best HMM Match : WSC (HMM E-Value=1.4)                       30   2.4  
SB_49697| Best HMM Match : DUF602 (HMM E-Value=3)                      29   3.2  
SB_54976| Best HMM Match : MFS_1 (HMM E-Value=0.00064)                 29   4.2  
SB_26056| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_51254| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_21448| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_46141| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_52188| Best HMM Match : MFS_1 (HMM E-Value=2.5e-16)                 28   7.3  
SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)                       28   9.7  
SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   28   9.7  
SB_6308| Best HMM Match : CDC73 (HMM E-Value=5)                        28   9.7  

>SB_41085| Best HMM Match : Auxin_repressed (HMM E-Value=9)
          Length = 206

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 598 SAGTAGSAPAVSVNPTSVYVPFISSTVHGRMRRCRSTE 485
           SAGT G++P+   NP ++Y PF   T      R  +T+
Sbjct: 89  SAGTVGASPSNPANPGTIYNPFDRITYQDTEARDTTTD 126


>SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 648 ILAFTFYGLRYTGLASSNEYSLVAVCEIWKCYTSLGLGMQYYI 776
           +    FYG  ++G  + N Y      +I KCY  +G    YY+
Sbjct: 790 VFGVKFYGECWSGKDAQNTYDEYGKDDIKKCYKGVGTHDNYYV 832


>SB_30903| Best HMM Match : WSC (HMM E-Value=1.4)
          Length = 109

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 648 ILAFTFYGLRYTGLASSNEYSLVAVCEIWKCYTSLGLGMQYYI 776
           +    FYG  ++G  + N Y      +I KCY  +G    YY+
Sbjct: 63  VFGVKFYGECWSGKDAQNTYDEYGKDDIKKCYKGVGTHDNYYV 105


>SB_49697| Best HMM Match : DUF602 (HMM E-Value=3)
          Length = 294

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 515 RKNASMPLHRMPSRATTTKTAAVSAPYRRTTFMGRANTPVAVCHHHS 375
           R+   M   R P  + + + + V  P  R+  M R +TP +  +H S
Sbjct: 91  RRRLEMGEQREPDASASARVSRVDDPSSRSPIMPRPSTPASTSNHES 137


>SB_54976| Best HMM Match : MFS_1 (HMM E-Value=0.00064)
          Length = 538

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/74 (21%), Positives = 30/74 (40%)
 Frame = +3

Query: 459 FCCGSSTGHSVERHRRILPWTVEEMNGTYTEVGLTLTAGALPAVPALWWAEALVDYIGHS 638
           F CG++ G      +  L W + E+ G      L     +   V    +++  + ++GH 
Sbjct: 352 FFCGTAIGFI----QTFLFWHLRELGGEQELFSLITMTNSAAEVTVYTFSDRFLSHVGHF 407

Query: 639 NVFILAFTFYGLRY 680
            V  +    Y LR+
Sbjct: 408 KVVYMGLLCYSLRF 421


>SB_26056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 515 RKNASMPLHRMPSRATTTKTAAVSAPYRRTTFMGRANTPVAVCHHHS 375
           R+   M   R P  + + + + V  P  R++ M R +TP +  +H S
Sbjct: 105 RRRLDMREQREPDASASARVSRVDDPSSRSSIMPRPSTPASNSNHES 151


>SB_51254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 316 FMILAALILVFDSHMPLSTPEWWWHTATG 402
           F I   L+   D+ + ++   WWW T TG
Sbjct: 4   FCISVVLLTDADTRLVITLSGWWWDTVTG 32


>SB_21448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 543

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 435 VWSRDCCSFCCGSSTGHSVERHRRILPWTVE 527
           VW+R CC  CC S  G   E H  +  + V+
Sbjct: 507 VWTRCCCCQCCVSCCG---EEHEMVATYNVD 534


>SB_46141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +2

Query: 266 IKCP--TPHILFRLFYTQSS*YWLP*Y*YLTVTCHYRRRNGGGTRRQECWPCP*MWCAGM 439
           +KC   TP+ L +L  TQ+  +  P     +       R  GG  R++ + CP  W   +
Sbjct: 7   LKCQPQTPYALMKLLITQNYMFVKPPSNARSTQPMPLPRMSGGFGRRDSYQCPFRWATDL 66

Query: 440 EPRLLQFLL 466
           +     FLL
Sbjct: 67  DSNRKPFLL 75


>SB_52188| Best HMM Match : MFS_1 (HMM E-Value=2.5e-16)
          Length = 507

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 220 YTGTGYLPAAGRLAADQMPDTPYLVPFILHAIFMIL 327
           Y   G     GRL A ++ D P+L P  + A+F  L
Sbjct: 339 YLAYGIATTIGRLVAGKILDVPFLNPVYVFAVFATL 374


>SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)
          Length = 883

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 14  DEPDGVLADAECRLVIGDPTSSFW 85
           D PDG +AD E R  +   TS  W
Sbjct: 502 DRPDGGMADGETRAAVTTKTSLLW 525


>SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -2

Query: 533 HLLNGPRKNASMPLHRMPSRATTTKTAAVSAPYRR 429
           HLLN   + AS   +R  SRAT T+T  +SAP  R
Sbjct: 15  HLLNRDLRPASTTPYR--SRATVTRTRPLSAPPSR 47


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 339 ISI*QSHATIDAGMVVAH-GDRSVGPAHECGAPVWSRDCCSFCCGSSTG 482
           I I  S+  +++  V AH GD      + CG  V S  CC   CG+S G
Sbjct: 75  IPIRPSNIKLNSAGVPAHKGDTG---RYYCGRQVLSCSCCDGFCGTSNG 120


>SB_6308| Best HMM Match : CDC73 (HMM E-Value=5)
          Length = 388

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 455 AAVSAPYRRTTFMGRANTPVAVCHHHSGVDSGM*LSNTNIKA 330
           A  S P +R  +    NT  AV ++H GVD G   S    KA
Sbjct: 213 AQESVPSKRWVWKDDTNTLEAVSNNHGGVDKGANYSTAANKA 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,871,495
Number of Sequences: 59808
Number of extensions: 621350
Number of successful extensions: 1605
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)