Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00416
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical...    32   0.53 
AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical...    29   4.9  
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AF162673-1|AAF80461.1|  568|Caenorhabditis elegans CNT-like nucl...    28   8.6  
AF016413-5|AAB65255.1|  568|Caenorhabditis elegans Hypothetical ...    28   8.6  

>AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical
           protein Y71G12B.25 protein.
          Length = 447

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 510 LPWTVEEMNGTYTEVGLTLTAGALPAVPALWWAEALVDYIGHSNVFILAFTFYGLRYTGL 689
           L W  EE+  T T++G     G+L        A  L D +G  ++F+L+  F  + Y+G+
Sbjct: 34  LQWDTEEVM-TITDLGYIQAFGSLCNAFGALAAGQLADTLGAQSMFLLSAVFTAIYYSGI 92

Query: 690 ASSNEY 707
           + +  +
Sbjct: 93  SLARSW 98


>AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical
           protein Y62H9A.1 protein.
          Length = 366

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 603 WAEALVDYIGHSNVFILAFTFYGLRYTGLASSNEYSLVAVCEI 731
           W    ++     NVF+ A T Y +R  G     +Y  V VC +
Sbjct: 23  WLRRYMEITSVLNVFLTALTLYLVRVEGKTLKRDYKQVLVCNL 65


>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
            F31C3.3 protein.
          Length = 2029

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 620  YKCFGPPERRHGWKCARGQRQPHFSICAVH 531
            ++C G P   HG +    QR PH+S    H
Sbjct: 1051 WECGGDPHEHHGVQLCSPQRLPHYSSTEEH 1080


>AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.7 protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 204 LPTSPRPNEVSRVAITHAVLSRANAAVGHMSAIDLRI 94
           +PT+P  +  S   ++H  L   N+ V   SAID+ +
Sbjct: 154 IPTTPATSSASSSYVSHKTLLELNSKVSKTSAIDVSV 190


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
            F20C5.2b protein.
          Length = 1130

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 630  QCSLQVLRPTRAPARLEVRPRSASTPLQYMCRSSP 526
            +CS++ L P  +P+++     S+S    + C SSP
Sbjct: 1072 KCSMKRLHPPTSPSKISKSASSSSDLTSFFCISSP 1106


>AF162673-1|AAF80461.1|  568|Caenorhabditis elegans CNT-like
           nucleoside transporter protein.
          Length = 568

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 607 PKHL*TTLDTLMYSS*LLHFTDFDTPVWLAVTNTVWWQSVKFGS--VTLVWVWVC 765
           P  + T+L TL+Y S ++    +   + +A+  + W+  V  G+  V  V+ W C
Sbjct: 229 PVFIFTSLQTLIYFSAVVALLFYFGIIQIALKKSTWFMKVLIGTTPVESVYSWAC 283


>AF016413-5|AAB65255.1|  568|Caenorhabditis elegans Hypothetical
           protein F27E11.1 protein.
          Length = 568

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 607 PKHL*TTLDTLMYSS*LLHFTDFDTPVWLAVTNTVWWQSVKFGS--VTLVWVWVC 765
           P  + T+L TL+Y S ++    +   + +A+  + W+  V  G+  V  V+ W C
Sbjct: 229 PVFIFTSLQTLIYFSAVVALLFYFGIIQIALKKSTWFMKVLIGTTPVESVYSWAC 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,495,784
Number of Sequences: 27780
Number of extensions: 438577
Number of successful extensions: 1249
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)