Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00416
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             30   0.028
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    26   0.34 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   1.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   3.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 29.9 bits (64), Expect = 0.028
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -2

Query: 527 LNGPRKNASMPLHRMPSRATTTKTAAVSAPYRRTTFMGRANTPVAVCHHH 378
           L+ P  + S+P     +  TTT T A +A    TT  G         HHH
Sbjct: 94  LHPPASSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHH 143


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 310 AIFMILAALILVFDSHMPLSTPEWWWHTAT 399
           A F ++AA++L     +    P WW+ TAT
Sbjct: 6   AWFEVIAAVLLTILIFVTSHRPAWWFWTAT 35


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 530  LLNGPRKNASMPLHRMPSRATTTKTAAVSAPYRRTTFMGRANTPVAVCHHHSGV 369
            +L  P +N    +  MP+R +TTK++AV+A    ++ +       A C  +  V
Sbjct: 905  ILIRPERNVRQSM--MPTRYSTTKSSAVTAT-NASSMIAPVALTAATCDQNKAV 955


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 630 QCSLQVLRPTRAPARLEVRPRSASTPLQYMCRSSPQRSTEE 508
           + S+ +  P   P   + R      PL+ MCR  P  S EE
Sbjct: 85  EASVSLFCPRAKPGEKKFRKVITKAPLECMCR--PCTSVEE 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,383
Number of Sequences: 438
Number of extensions: 4877
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)