Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00416
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10200.1 68418.m01181 expressed protein ; expression supporte...    30   2.0  
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    29   4.5  
At2g26320.1 68415.m03158 MADS-box protein (AGL33) contains Pfam ...    28   6.0  
At3g61080.1 68416.m06836 fructosamine kinase family protein cont...    28   7.9  

>At5g10200.1 68418.m01181 expressed protein ; expression supported
           by MPSS
          Length = 621

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 479 WAFCGAASTHSSVDR*GDERHIY*SGVDADRGRTSSRA 592
           W F  AA  H  V R G+ER +Y +  D     T+S +
Sbjct: 535 WLFKEAALKHGGVHRKGEEREVYGNETDDSEWETASES 572


>At5g03800.1 68418.m00347 exostosin family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles: PF03016 exostosin family,
           PF01535 PPR repeat
          Length = 1388

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 612 ALVDYIGHSNVFILAF-TFYGLRYTGLASSNEYSLVAVCEIWKCYTSLGLGMQYY 773
           AL+      N+ I A   F+ +R  GL   NEY+ VA+       +   LG+Q +
Sbjct: 150 ALISGFSRLNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRVSRFSLGIQIH 204


>At2g26320.1 68415.m03158 MADS-box protein (AGL33) contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 109

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -1

Query: 621 LQVLRPTRAPARLEVRPRSASTPLQYMCRSSPQRSTEEC 505
           L V+ PT  P     R RS  T L+  C  S Q   E C
Sbjct: 61  LIVVSPTEKPTVFNTRSRSFHTILERFCMLSLQEREERC 99


>At3g61080.1 68416.m06836 fructosamine kinase family protein
           contains Pfam PF03881: Fructosamine kinase
          Length = 326

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 327 GCLNISI*QSHATIDAGMVVAHGDRSVGPA 416
           GC+N++   SH   DAG      +RS+GPA
Sbjct: 60  GCINLA---SHYQTDAGSFFVKTNRSIGPA 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,298,617
Number of Sequences: 28952
Number of extensions: 403708
Number of successful extensions: 1125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)