Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00415
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 30 0.41
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 0.96
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 27 2.2
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb... 27 2.9
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 27 3.9
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 26 5.1
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 26 5.1
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 6.7
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 8.9
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 29.9 bits (64), Expect = 0.41
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 359 VERGLLFPSLRHLRYSSCSLH 297
++ L FP+ RH+ YS+CS+H
Sbjct: 328 LKHALQFPNCRHVTYSTCSVH 348
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 28.7 bits (61), Expect = 0.96
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 514 GLHI-GEHGERKPHLSNLESHLDRMR 588
GLH GEH ER PHL N + + + R
Sbjct: 41 GLHFDGEHTERDPHLGNGQKYTQQER 66
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.5 bits (58), Expect = 2.2
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Frame = +1
Query: 274 DNFIKEQKCKEHELYL---KCLKDGNSKPLSTGKTWPL----SDKDDDVMIIED-ELPPI 429
D+ +E++ H++YL D N L+ K L D++DD D E PI
Sbjct: 114 DSLGEERRAWPHQMYLVGGSQALDSNDNELTVMKLSQLYKTQHDENDDASDNSDVEEDPI 173
Query: 430 DAEDEIVT---CDQA-----PREKLRPKLL-SFHETDGLHIGEHGERKPHLSNLES 570
I T C++ P + LL SFHET +HI + PHL +L+S
Sbjct: 174 LEHKSISTKGACNRVRSARRPANSSKESLLASFHETGKVHIWDIA---PHLRSLDS 226
>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 185 NMLSSFTLKLDMRLAPTTRAELSVIRDISWTILLRNRSAKNMNY 316
N ++FT L RLA + E +V+R + TI R A+ ++Y
Sbjct: 45 NHAATFTPDLAKRLAVLVKMEKNVMRSMEVTIRGRRDCARQLSY 88
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 26.6 bits (56), Expect = 3.9
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = +1
Query: 352 LSTGKTWPLSDKDDDVMIIEDELPPIDAEDEIVTCDQAPREKLRPKLLSFHETDGLHIGE 531
L + K +S DD +I EDEL A D ++ + E + K + T GL E
Sbjct: 148 LKSDKENLISGDDDQELIDEDELLDESAHDNVLKVPECKPEPGKKKRACKNCTCGLREME 207
Query: 532 HGERKPHLSNLES 570
E + LE+
Sbjct: 208 EHESSKTSAQLEA 220
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +1
Query: 289 EQKCKEHELYLKCLKDGNSKPLSTGKTWPLSDKDDDVMIIEDELPPIDAEDEIVTCDQAP 468
E K KE+E +L C+ + S+ T + K D MI+ + D ++ + +
Sbjct: 691 ETKLKEYEQHLSCVNISKKQVSSSSDTSFGNTKMDSSMILSNSEAVSDEQERELIESEKH 750
Query: 469 REKLRPKLL 495
R KL + L
Sbjct: 751 RMKLESENL 759
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 532 HGERKPHLSNLESHLDRMRNNLTTK 606
HGE+ PH + LE L+ R N T K
Sbjct: 490 HGEKIPHPNGLEYTLEGPRKNWTGK 514
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 645 HPPVLLPIPHHYRLR 601
HPP+L IPH + LR
Sbjct: 162 HPPILFIIPHSHTLR 176
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 217 HEISTYN*S*IECNKRHQLDNFIKEQKCKEHELYLKCL 330
HEIS +N + +K+H L + + KC L L CL
Sbjct: 1594 HEISRFNSQSVFKSKKHHLKSIV--VKCTLQLLMLNCL 1629
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,399
Number of Sequences: 5004
Number of extensions: 44020
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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