Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00415
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609... 44 2e-04
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 36 0.027
02_02_0351 + 9257204-9261388 31 0.76
11_06_0002 + 19154489-19155172,19155260-19155298 31 1.3
06_01_0416 + 2965761-2965809,2965995-2966172,2966256-2966327,296... 29 4.0
04_04_0199 - 23519597-23520282,23520913-23521471 29 4.0
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 29 5.3
07_01_0060 - 445619-445739,446026-446182,446274-446365,446516-44... 29 5.3
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 7.1
>07_01_1104 -
10160493-10160599,10160632-10160637,10160930-10160975,
10161053-10161190,10161275-10161679,10163193-10163330,
10163401-10163482,10163596-10163943,10164294-10164655,
10165154-10165209,10166428-10166558,10166564-10166628,
10169191-10169631
Length = 774
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +3
Query: 507 NRRPPYWGTWRKKTTFVKPRKPFGQD-----EKQLXXXXXXXXXXXXXXXXXSIDGSAVG 671
+ RP Y+GTW K++ V R PF D + + D A+G
Sbjct: 455 SHRPAYYGTWTMKSSTVSARHPFKVDPLLDYDVDSDEEWEEEEPGENLSDFDNDDEEAMG 514
Query: 672 SDDEQDGDEYEVDNEVFVPHGYLSDEE 752
D + E E DN VP+ YLS++E
Sbjct: 515 EKDSKHDAEEETDNSFVVPNDYLSEDE 541
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 36.3 bits (80), Expect = 0.027
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 507 NRRPPYWGTWRKKTTFVKPRKPFGQD 584
+ RP Y+GTWRKK+ V PR P D
Sbjct: 606 SNRPAYYGTWRKKSAVVGPRCPLKMD 631
>02_02_0351 + 9257204-9261388
Length = 1394
Score = 31.5 bits (68), Expect = 0.76
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 359 VERGLLFPSLRHLRYSSCSLHFCSLIKLSN 270
VE G++FPS++ L S C L SL KL N
Sbjct: 1054 VEEGVIFPSVQQLEISDCRLTRNSLTKLLN 1083
>11_06_0002 + 19154489-19155172,19155260-19155298
Length = 240
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 669 GSDDEQDGDEYEVDNEVFVPHGYL 740
G + ++G +YE D+ VF HGYL
Sbjct: 170 GKKEVEEGGDYEADDPVFSEHGYL 193
>06_01_0416 +
2965761-2965809,2965995-2966172,2966256-2966327,
2966849-2967137,2967941-2968081,2969011-2969115,
2969354-2969501,2970023-2970075,2970189-2970266,
2970361-2970480,2970779-2970943,2971663-2971797,
2972063-2972182
Length = 550
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 565 LGLTNVVFFLHVPQYGGRRF 506
L L +++FFLH+P+ GGR +
Sbjct: 54 LSLRDLLFFLHIPRTGGRTY 73
>04_04_0199 - 23519597-23520282,23520913-23521471
Length = 414
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = +1
Query: 376 LSDKDDDVMIIEDELPPIDAEDEIVTCDQAPREKLRPKLLSFHET-DGLHIGEHGERKPH 552
+S +DDV+ ++ + E ++ REK L E DG+HI ER
Sbjct: 214 VSPDEDDVLETNQKMSHL--EQKLEEASNTIREK-NSVLSQLQELIDGMHIATPAERAFD 270
Query: 553 LSNLESHLDRM---RNNLTTKSIVMRNGKKNRRVK 648
+ LE+ LDR + +S+VM +++ +V+
Sbjct: 271 IDQLETDLDRQLQEKIEAEIQSLVMLKARQSWQVR 305
>10_08_0558 + 18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 28.7 bits (61), Expect = 5.3
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Frame = +1
Query: 256 NKRHQLDNFIKEQKCKEHELYLKCLKDGNSKPLSTGKTWPLSDKDDDVMIIEDELPPIDA 435
N ++ DN +E + K+ EL C KD L D+D ++ ++ EL I
Sbjct: 778 NLSNERDNLFEENEQKDKELAANCQKD-----------MFLQDRDAEIALLNKELASIKD 826
Query: 436 E-----DEIVTCDQAPR------EKLRPKLLSF-HETDGLHI-GEHGERKPHLSNLESHL 576
+ +EI T + EKL+ ++ S E D L I + + H NL S +
Sbjct: 827 QVQTYLEEINTLKSSKNEKEEMIEKLQSEIRSLKFEYDNLKILMSTNDSEKH--NLASQV 884
Query: 577 DRMRNNLTTKSIVMRNGKKN 636
++R L ++ V +NG K+
Sbjct: 885 LKLRRALESREDVKQNGVKS 904
>07_01_0060 -
445619-445739,446026-446182,446274-446365,446516-446580,
447052-447117,447707-447838,448125-448298,449025-449183,
449297-449384,449492-449573,449757-449874,449959-450162
Length = 485
Score = 28.7 bits (61), Expect = 5.3
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +1
Query: 322 KCLKDGNSKPLST----GKTWPLSDKDDDVMIIEDELPPIDAEDEIVTCDQAPREKLRPK 489
+CL +GN K L L+D+ I +DE P I A V D P +
Sbjct: 232 QCLSEGNIKELLKFCFHENLVLLADEVYQQNIYQDERPFISARK--VLFDMGPPMSREVQ 289
Query: 490 LLSFHETDGLHIGEHGER 543
L+SFH + GE G+R
Sbjct: 290 LVSFHTVSKGYWGECGQR 307
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +1
Query: 334 DGNSKPLSTGKTWPLSDKDDDVMIIEDELPPIDAEDEIVTCDQAPREKLRPK 489
D P +T LS D +V+ EDE P DE D AP E+ RP+
Sbjct: 892 DPQDGPEATAGRPLLSSSDPEVIGTEDECAPRAHLDEERPGDAAPSEEDRPR 943
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,293,933
Number of Sequences: 37544
Number of extensions: 274621
Number of successful extensions: 992
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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