Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00415
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.005
SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17)                   31   1.4  
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   1.8  
SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_24366| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 675 DDEQDGDEYEVDNEVFVPHGYLSDEE 752
           +D +D DE + D   FVPHGYLSD+E
Sbjct: 4   EDNEDNDEDDEDEGFFVPHGYLSDDE 29


>SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17)
          Length = 259

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 26/90 (28%), Positives = 41/90 (45%)
 Frame = +1

Query: 253 CNKRHQLDNFIKEQKCKEHELYLKCLKDGNSKPLSTGKTWPLSDKDDDVMIIEDELPPID 432
           C +  ++   I   + ++HE Y   ++DGN K L+  +   L  K   V  +E +   I 
Sbjct: 132 CKQCIEIAKHISLNELRKHEKY-SLVEDGNGKQLAERRVELLEGK---VATLEQKPNSIR 187

Query: 433 AEDEIVTCDQAPREKLRPKLLSFHETDGLH 522
            E +  TC+ A RE  R      H+ DG H
Sbjct: 188 KEIK-ETCEWAIREISRVVFHKKHQGDGKH 216


>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1741

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
 Frame = +1

Query: 253  CNKRHQLDNFIKEQKCKEHELYLKCLKDGNSKPLSTGKTWPLSDKDDDVMIIEDELPPID 432
            CN +H+   FI +  CK+   + +  K       +  K W    +  ++ +   E   +D
Sbjct: 1196 CNVKHRGIFFIPDSVCKDDSAFPRSQKAMKCHFTNKHKEWYFQKESAEIEMDSKEASTVD 1255

Query: 433  AEDEIVTCDQAPREKLRPKL-LSFHETDGLHIGEHGERKPHLSN 561
             E + + CD   ++K    L L FH     H   HG+  P   N
Sbjct: 1256 -EQKPLKCDLC-KKKFNTLLGLKFH-----HSLRHGQHSPEEFN 1292


>SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 675 DDEQDGDEYEVDNEVFVPHGYLSDEEATM 761
           DDE+D +E E D E F   G L ++EAT+
Sbjct: 97  DDEEDDEEAE-DMEAFEESGMLENDEATL 124


>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 9/139 (6%)
 Frame = +1

Query: 256 NKRHQLDNFIKEQKCKEHELYLKCLKDGNSKPLSTGKTWPLSDKDDDVMI-IEDELPP-- 426
           NKRH LD+ +  Q  +E +  L+  + G   P ST K       + D++I  +DEL    
Sbjct: 544 NKRHTLDSML--QWVREKKASLEMAEYGLDLP-STQKCLQEHHGEHDLVIAFDDELAAAK 600

Query: 427 ---IDAEDEIVTCDQA---PREKLRPKLLSFHETDGLHIGEHGERKPHLSNLESHLDRMR 588
              +  E  + T  +        L+PK+L  HE     +    ER  HL +L   +    
Sbjct: 601 KYEVGYESSVNTSARGITVEDPSLKPKILELHEEYVTLVTASVERMRHLKSLVEFMSE-- 658

Query: 589 NNLTTKSIVMRNGKKNRRV 645
               TK ++  N ++   V
Sbjct: 659 ---ATKELIWMNQREEPEV 674


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 385  KDDDVMIIEDELPPIDAEDEIVTCDQAPREKLRPKLLSFHETDGLHIGEHGERKPH 552
            K  DV + E+E PP  A  +  + D+ P E+   K LS  E + +      ++K H
Sbjct: 1140 KPVDVEMGEEEAPPCKAARKSPSADEEPAEEAPSKALSGEEDEWVEKEGKEKKKKH 1195


>SB_24366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +1

Query: 352 LSTGKTWPLSDKDDDVMIIEDELPPIDAEDEIVTCDQAPREKLRPKLLSFHETDGLHIGE 531
           LS  +T  L +K    +   D  PP+ +ED++   D    E       S HE   + + E
Sbjct: 63  LSENETTLLLEKKVVELKQSDSAPPLPSEDKVKRLDFLREE-------SMHEQARMFLEE 115

Query: 532 HGERKPHLSN-LESHLDRMRN 591
             E+K  LS  +E    R RN
Sbjct: 116 REEKKQELSEVIEEGRKRKRN 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,796,711
Number of Sequences: 59808
Number of extensions: 322376
Number of successful extensions: 1201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)