Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00415
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110471-2|CAB63306.1|  479|Caenorhabditis elegans Hypothetical ...    45   7e-05
Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical pr...    34   0.13 
AL132858-4|CAB60479.2|  338|Caenorhabditis elegans Hypothetical ...    29   3.6  
AL132858-3|CAB60478.2|  391|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF381629-1|AAL12002.1|  223|Caenorhabditis elegans homeodomain p...    29   3.6  
AF381628-1|AAL12001.1|  372|Caenorhabditis elegans homeodomain p...    29   3.6  
AF381627-1|AAL12000.1|  332|Caenorhabditis elegans homeodomain p...    29   3.6  
U80023-11|AAG24044.1|  331|Caenorhabditis elegans Seven tm recep...    29   4.8  
AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical...    29   4.8  
AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical...    28   6.3  
AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical...    28   6.3  
U42846-2|AAA83601.1|  108|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AL110471-2|CAB63306.1|  479|Caenorhabditis elegans Hypothetical
           protein T06D10.2 protein.
          Length = 479

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = +3

Query: 507 NRRPPYWGTWRKKTTFVKPRKPFGQD---EKQLXXXXXXXXXXXXXXXXXSIDGSAVGSD 677
           NRRP Y+GTWRKK+  V    P  ++   +  +                 S D +   +D
Sbjct: 308 NRRPQYYGTWRKKSKIVSGSCPLAEEIGIDYNVVSDDEWEDEPSDGEECNSDDDAEKDND 367

Query: 678 DEQDGDEYEVDNEVFVPHGYLSDEE 752
           D+  G+E   D+  FVP  YLSD E
Sbjct: 368 DDDGGEE---DDGFFVPPCYLSDGE 389


>Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical
           protein F11E6.7 protein.
          Length = 1011

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
 Frame = +1

Query: 310 ELYLKCLKDGNSKPLSTGKTWPLSDKDDDVMIIE-DELPPIDAEDEIVTCDQAPREKLRP 486
           E + K L   N +      + P S   ++  I+  DE+P +  E         P +K   
Sbjct: 327 EQFKKALTAMNFEVEDESVSAPTSKNSENPEILPIDEIPTVHVESAKSDKTPEPVKKTNK 386

Query: 487 KLLSFHETDGLHIGEHGERKPHLSN--LESHLDRMRNNLTTKSIVMRNGKKNRRV 645
           +   FH+           RKP ++N  L   L+++  + +TKS   + G+K+  +
Sbjct: 387 RRRLFHDQPVSAFATESSRKPEIANNDLGEILEKLPEHASTKSPEQKRGRKDSAI 441


>AL132858-4|CAB60479.2|  338|Caenorhabditis elegans Hypothetical
           protein Y113G7A.6b protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 119 NFFVPKQKSDKDQATVGSISKNNMLSSFTLKLDMRLAPTTRAELSVI 259
           N ++P   SD   AT+GS+S N     F+ K        TR +L ++
Sbjct: 115 NMYIPSSLSDCPTATMGSMSWNANQPGFSRKQRRERTTFTRNQLEIL 161


>AL132858-3|CAB60478.2|  391|Caenorhabditis elegans Hypothetical
           protein Y113G7A.6a protein.
          Length = 391

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 119 NFFVPKQKSDKDQATVGSISKNNMLSSFTLKLDMRLAPTTRAELSVI 259
           N ++P   SD   AT+GS+S N     F+ K        TR +L ++
Sbjct: 168 NMYIPSSLSDCPTATMGSMSWNANQPGFSRKQRRERTTFTRNQLEIL 214


>AF381629-1|AAL12002.1|  223|Caenorhabditis elegans homeodomain
           protein TTX-1 protein.
          Length = 223

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 119 NFFVPKQKSDKDQATVGSISKNNMLSSFTLKLDMRLAPTTRAELSVI 259
           N ++P   SD   AT+GS+S N     F+ K        TR +L ++
Sbjct: 131 NMYIPSSLSDCPTATMGSMSWNANQPGFSRKQRRERTTFTRNQLEIL 177


>AF381628-1|AAL12001.1|  372|Caenorhabditis elegans homeodomain
           protein TTX-1 protein.
          Length = 372

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 119 NFFVPKQKSDKDQATVGSISKNNMLSSFTLKLDMRLAPTTRAELSVI 259
           N ++P   SD   AT+GS+S N     F+ K        TR +L ++
Sbjct: 149 NMYIPSSLSDCPTATMGSMSWNANQPGFSRKQRRERTTFTRNQLEIL 195


>AF381627-1|AAL12000.1|  332|Caenorhabditis elegans homeodomain
           protein TTX-1 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 119 NFFVPKQKSDKDQATVGSISKNNMLSSFTLKLDMRLAPTTRAELSVI 259
           N ++P   SD   AT+GS+S N     F+ K        TR +L ++
Sbjct: 109 NMYIPSSLSDCPTATMGSMSWNANQPGFSRKQRRERTTFTRNQLEIL 155


>U80023-11|AAG24044.1|  331|Caenorhabditis elegans Seven tm receptor
           protein 47 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -1

Query: 642 PPVLLPIPHHYRLRSQVVSHPVQMAF*V*QMWFSFSMFPNMEAVGFM 502
           P VL   P  + L S ++   ++M+F    ++   SMFP+++++GFM
Sbjct: 255 PTVLFVFPAVFVLLSPILD--LEMSFQTGWIYALISMFPSIDSIGFM 299


>AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.17 protein.
          Length = 913

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 267 MSLITLNSALVVGANLMSNFKVKLDSILFLLIEPTVAWSLSDFCF 133
           + L+TLN A +V    +      +DS +FLL   +++W L   C+
Sbjct: 87  LPLLTLNRASIVTFGFLLLIYQAIDSNVFLLYLYSISWGLIAACY 131


>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
            protein Y105E8A.26b protein.
          Length = 1133

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 301  KEHELYLKCLKDGNSKPLSTGK 366
            +EHE+Y+K  ++G+S P+   K
Sbjct: 1034 QEHEIYVKVCREGDSSPIDRSK 1055


>AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
            protein Y105E8A.26a protein.
          Length = 1172

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 301  KEHELYLKCLKDGNSKPLSTGK 366
            +EHE+Y+K  ++G+S P+   K
Sbjct: 1073 QEHEIYVKVCREGDSSPIDRSK 1094


>U42846-2|AAA83601.1|  108|Caenorhabditis elegans Hypothetical
           protein T19D2.3 protein.
          Length = 108

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 663 AVGSDDEQDGDEYEVDNEV 719
           A+G DD+ D D+ +VDN+V
Sbjct: 69  ALGEDDDDDDDDDDVDNDV 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,411
Number of Sequences: 27780
Number of extensions: 253422
Number of successful extensions: 1084
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)