Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00415
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)...    37   0.013
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain...    31   1.1  
At4g05470.1 68417.m00829 F-box family protein (FBL21) contains s...    30   1.5  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    30   1.9  
At1g13330.1 68414.m01547 expressed protein similar to nuclear re...    29   3.4  
At5g44630.1 68418.m05468 terpene synthase/cyclase family protein       29   4.5  
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic...    29   4.5  
At5g53240.1 68418.m06618 expressed protein contains Pfam profile...    28   5.9  
At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase, p...    28   5.9  

>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
           (FAS1) identical to FAS1 [Arabidopsis thaliana]
           GI:4887626
          Length = 815

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
 Frame = +3

Query: 513 RPPYWGTWRKKTTFVKPRKPFGQDEKQLXXXXXXXXXXXXXXXXXSIDGSAVGSDDE-QD 689
           RP ++G W  ++  VKPR+P  Q + +L                 S+       D+  ++
Sbjct: 490 RPGFYGIWPSQSQVVKPRRPL-QKDPELDYEVDSDEEWEEEEAGESLSDCEKDEDESLEE 548

Query: 690 G-----DEYEVDNEVFVPHGYLSDEE 752
           G     DE + +++  VP GYLS++E
Sbjct: 549 GCSKADDEDDSEDDFMVPDGYLSEDE 574


>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to CLATHRIN
           COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
           SWISSPROT:Q61548
          Length = 599

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
 Frame = +1

Query: 271 LDNFIKEQKCKEHELYLKCLKDGNSKPLSTGKTWPLSDKDDDVMIIED-ELPPIDAEDEI 447
           +D FI+++   EH    K +K    +     +T  ++++ +D+  I+    PP   ED++
Sbjct: 318 MDEFIRDKSALEHTKQSKSVKSEADEDDDEARTEEVNEEQEDMNAIKALPEPPPKEEDDV 377

Query: 448 VTCDQAPREKLRPK-------LLSFHETDGLHIGEHGE 540
              ++A  E +  K       LL    T+G   G+ G+
Sbjct: 378 KPEEEAKEEVIIEKKQEEMGDLLDLGNTNGGEAGQAGD 415


>At4g05470.1 68417.m00829 F-box family protein (FBL21) contains
           similarity to N7 protein GI:3273101 from [Medicago
           truncatula]
          Length = 576

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +1

Query: 355 STGKTWPLSDKDDDVMIIEDELPPIDAEDEIVTCDQAPREKLRPKLLSFHETDGLHIGEH 534
           S G+ WP SDK D  ++  D++ P++ +D+ +   ++   KL    L  +      +   
Sbjct: 470 SLGRLWPASDKYDSNVL--DDMGPLECDDDALAIAES-MPKLHHLQLMANRLTNTGLNAI 526

Query: 535 GERKPHLSNLE 567
            +  PHL +L+
Sbjct: 527 LDGCPHLEHLD 537


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 328 LKDGNSKPLSTGKTWPLSDKDDDVMIIEDELPPIDAEDE 444
           + DG S PLST +    S  DDD   +E+E+ P  + D+
Sbjct: 467 ISDGTSTPLSTARAHVRSHSDDD---LEEEMSPRHSGDQ 502


>At1g13330.1 68414.m01547 expressed protein similar to nuclear
           receptor coactivator GT198 (GI:16506273) {Rattus
           norvegicus}; similar to TBP-1 interacting protein
           (GI:7328534) [Homo sapiens]
          Length = 226

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +1

Query: 538 ERKPHLSNLESHLDRMRNNLTTKSIVMRNGKKNRRVK 648
           E+K  +S++ES +  +++NLT + I  ++ K  + VK
Sbjct: 97  EKKKTISDVESEIKSLQSNLTLEEIQEKDAKLRKEVK 133


>At5g44630.1 68418.m05468 terpene synthase/cyclase family protein 
          Length = 557

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +1

Query: 376 LSDKDDDVMIIEDELPPIDAEDEIVTCDQAPREKLRPKLLSFHETDGLHIGEHGERK 546
           ++D D DV+  E E+      + I       ++ ++  +LS H  D L +  H E++
Sbjct: 32  IADSDFDVLEREIEVLKPKVRENIFVSSSTDKDAMKKTILSIHFLDSLGLSYHFEKE 88


>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
           to chromomethylase CMT2 [Arabidopsis thaliana]
           GI:14583094
          Length = 1295

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 657 GSAVGSDDEQDGDEYEVDNEVFVPHG 734
           GS+  SDD+ D +EYEV+  V +  G
Sbjct: 823 GSSSSSDDDSDSEEYEVEKLVDICFG 848


>At5g53240.1 68418.m06618 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 361

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +1

Query: 289 EQKCKEHELYLKCLKDGNSKPLSTGKTWPLSDKDDDVMIIEDELPPIDAEDE 444
           E+K     +Y     D +   + +   W ++ KDD ++ ++D+L P+ +E +
Sbjct: 56  EKKVPPELVYNDIKDDDDIGTIGSSHGWVVTLKDDGILRLQDDLNPVASETD 107


>At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide S-acetyltransferase
           [Zea mays] GI:5669871; contains Pfam profiles PF00198:
           2-oxo acid dehydrogenases acyltransferase (catalytic
           domain), PF00364: Biotin-requiring enzyme, PF02817: e3
           binding domain
          Length = 539

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +1

Query: 268 QLDNFIKEQKCKEHELYLKCLKDGNSKPLSTGKTWPLSDKD-DDVMIIEDELPPIDAEDE 444
           + D    E +C E     K +K+  +K +  G+   ++ +D DD+   +D  P  D    
Sbjct: 149 ETDKATVEMECMEEGFLAKIVKEEGAKEIQVGEVIAITVEDEDDIQKFKDYTPSSDTGPA 208

Query: 445 IVTCDQAP 468
                 AP
Sbjct: 209 APEAKPAP 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,674,198
Number of Sequences: 28952
Number of extensions: 234169
Number of successful extensions: 917
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)