Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00413
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    30   0.18 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   1.7  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   5.2  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.8  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    25   6.8  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   9.0  

>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 171 WVLDGRRGGRSIFRVAHAAHASDEQHDESLFADPFGMFGGEN 296
           W +DG +   S+F++    H  + Q+  S ++D   +F G +
Sbjct: 233 WTIDGEKKDYSLFKMIRNTHLKNPQYTISAYSDNAAVFEGNS 274


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 263  EQRFIMLFI*RMCRMCDPKNGSSS-TSAIKDPNRDILMHCYQQLTI 129
            + RF ++     CR C   N  S   S +KD N      CY+Q+ +
Sbjct: 2560 DSRFSLMEWRSQCRACGNSNVCSDCVSMLKDTNIKTCYECYRQMPL 2605


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 219 HAAHASDEQHDESLFADPFGMF-GGENHMAIM-GPRHNTALMPFMPQMPSMN 368
           H     D    +  F + F +  GG NH A   G R N A+ PF+P + + N
Sbjct: 125 HLGLTPDRYPSKRGFKESFALLPGGGNHFAYEPGTRENPAV-PFLPPLYTHN 175


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 383 YGWWKYECRQLFQQQYRCDVQWSER*TPGVQ 475
           +GWWK     L     +  V W+    PGVQ
Sbjct: 75  WGWWKKAYIVLLSTSLQMYVFWTPNFYPGVQ 105


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 224 RMCDPKNGSSSTSAIKDPNRDILMHCYQQL 135
           R  DPK GS    A++   + I+  C+Q L
Sbjct: 202 RFWDPKKGSPIGDALRRHTKPIMALCWQPL 231


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 299 HGDYGTTA*HRIDAIYATN 355
           H  YGT   H ID I ATN
Sbjct: 532 HRSYGTPPVHPIDIIIATN 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,411
Number of Sequences: 5004
Number of extensions: 41703
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)