Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00413
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234...    27   6.9  
10_07_0079 + 12665141-12665167,12665613-12665702,12665783-126663...    27   9.1  

>10_01_0217 +
           2337950-2338085,2340766-2342436,2342636-2342898,
           2343027-2343236,2343436-2343654,2344038-2345000,
           2345279-2345374,2345482-2345580,2345953-2346142,
           2346594-2346823
          Length = 1358

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 249 DESLFADPFGMFGGENHMAIMGPRHNTALM 338
           DE+LFADP   F G+N   ++      A M
Sbjct: 671 DEALFADPVAEFAGQNIGVVIAETQKYAYM 700


>10_07_0079 +
           12665141-12665167,12665613-12665702,12665783-12666310,
           12666341-12667741
          Length = 681

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -1

Query: 472 YTWGLPFGPLDITTVLLLKELPALIFPPSISLKSRFIEGICGINGIN 332
           +TW      + + +VL +K+      PP +  ++R ++ +C IN  N
Sbjct: 496 WTWEKHVEAMPVLSVLHVKDCNLSHLPPGLPYQARALKRLCVINARN 542


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,565,111
Number of Sequences: 37544
Number of extensions: 286387
Number of successful extensions: 618
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)