Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00413
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_4659| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)                 27   7.1  
SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)                   27   7.1  
SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5)                    27   7.1  

>SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 993

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 228 HASDEQHDESLFADPFGMFGGENHMAIMGPRHNTALMPFM 347
           H +    DES F D   +F  ++ MA++ P H   LMP +
Sbjct: 825 HVNKLLEDES-FRDELALFTVDDGMAVVDPAHREELMPIV 863


>SB_4659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 509 SIGTNFCTACRTVHLGFTVRTTGHHN 432
           S+G + CT  RT   G+TVRT  ++N
Sbjct: 87  SVGKHVCTWVRTSDAGYTVRTKLYNN 112


>SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
          Length = 854

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 509 SIGTNFCTACRTVHLGFTVRT 447
           S+G + CT  RT   G+TVRT
Sbjct: 423 SVGKHVCTLVRTSDAGYTVRT 443


>SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)
          Length = 989

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 509 SIGTNFCTACRTVHLGFTVRT 447
           S+G + CT  RT   G+TVRT
Sbjct: 528 SVGKHVCTLVRTSDAGYTVRT 548


>SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5)
          Length = 520

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 509 SIGTNFCTACRTVHLGFTVRT 447
           S+G + CT  RT + G+TVRT
Sbjct: 214 SVGKHVCTWIRTSNAGYTVRT 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,847,558
Number of Sequences: 59808
Number of extensions: 343710
Number of successful extensions: 2671
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2671
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)