Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00413
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    28   4.7  
U41007-7|AAA82268.3|  516|Caenorhabditis elegans Intramembrane p...    27   8.1  

>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 219 HAAHASD--EQHDESLFADPFGMFGGENHMAIMGPRHNTALMPFMPQM 356
           H++HAS+  E H ESL +    M G E+H       + T+     P +
Sbjct: 855 HSSHASEHIENHGESLQSPVASMAGSEHHNMAESSEYTTSEKEISPSI 902


>U41007-7|AAA82268.3|  516|Caenorhabditis elegans Intramembrane
           protease (impas)family protein 3 protein.
          Length = 516

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 454 FGPLDITTVLLLKELPALIFPPSISLKSRFI 362
           F  LD TTV+ + ++PA+I P   S+   F+
Sbjct: 34  FFELDSTTVIFMDQVPAMILPFVFSIVLYFV 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,370,143
Number of Sequences: 27780
Number of extensions: 243972
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)