Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00413
         (523 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03390.1 68417.m00461 leucine-rich repeat transmembrane prote...    31   0.47 
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated...    28   3.3  
At3g14980.1 68416.m01894 PHD finger transcription factor, putati...    28   3.3  
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r...    28   4.4  
At1g74710.2 68414.m08655 isochorismate synthase 1 (ICS1) / isoch...    27   7.7  
At1g74710.1 68414.m08654 isochorismate synthase 1 (ICS1) / isoch...    27   7.7  

>At4g03390.1 68417.m00461 leucine-rich repeat transmembrane protein
           kinase, putative similar to Z. mays leucine-rich repeat
           transmembrane protein kinase LRRTPK 1, GenBank accession
           number AF023164
          Length = 776

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -1

Query: 430 VLLLKELPALIFPPSISLKSRFIEGICGINGINAVLCRGPIIAMWFSPPNIPKGSA 263
           +LL   L  LI+ PSISL +   + +  ING+ A L   P++  W +    P G A
Sbjct: 11  LLLPLLLSLLIWIPSISLAATNPDDVAAINGLFAAL-GAPVLPGWIASGGDPCGEA 65


>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
           protein, Candida albicans, PIR2:S58135
          Length = 343

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 201 SIFRVAHAAHASDEQHDESLFADPFGMFGGENHMAIMGPRHN-TALMP 341
           SI    H  H+S   H   + +       G NH +I G  HN TA +P
Sbjct: 172 SILGSTHKNHSSGSNHSSIVGSTHNNHSSGSNHSSITGSTHNHTAPIP 219



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 219 HAAHASDEQHDESLFADPFGMFGGENHMAIMGPRHN 326
           H  H+S   H   L +       G NH +I+G  HN
Sbjct: 161 HNNHSSGSNHSSILGSTHKNHSSGSNHSSIVGSTHN 196


>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
            contains Pfam profile: PF00628 PHD-finger
          Length = 1189

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 484  LVELYTWGLPFGPLDITTVLLLKELPALIFPPSISLKSRFIE 359
            LVE +T G  F P+D      LK +  ++FP +  LK    E
Sbjct: 984  LVETWTEGFGFKPMDDEERDALKRINLMVFPGTTLLKKTLYE 1025


>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
           response factor 30 (GI:20145855) {Arabidopsis thaliana}
          Length = 313

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 219 HAAHASDEQHDESLFADPFGMFGGENHMAIMGPRHN 326
           H  H+S   H   + +       G NH +I GP HN
Sbjct: 131 HNNHSSGSNHSSIVGSTHKNHGSGSNHSSIAGPTHN 166



 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +3

Query: 201 SIFRVAHAAHASDEQHDESLFADPFGMFGGENHMAIMGPRHN 326
           SI    H  H S   H         G   G NH +I+G  HN
Sbjct: 142 SIVGSTHKNHGSGSNHSSIAGPTHNGHSSGSNHSSIIGSTHN 183


>At1g74710.2 68414.m08655 isochorismate synthase 1 (ICS1) /
           isochorismate mutase identical to GI:17223087 and
           GB:AF078080; contains Pfam profile PF00425: chorismate
           binding enzyme; contains TIGRfam profile TIGR00543:
           isochorismate synthases; identical to cDNA isochorismate
           synthase 1 precursor (ICS1) nuclear gene for plastid
           product GI:17223086
          Length = 622

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 240 EQHDESLFADPFGMFGGENHMAIMGPR 320
           E  D  ++A P G FGGE     +G R
Sbjct: 489 ESFDRGMYAGPIGFFGGEESEFAVGIR 515


>At1g74710.1 68414.m08654 isochorismate synthase 1 (ICS1) /
           isochorismate mutase identical to GI:17223087 and
           GB:AF078080; contains Pfam profile PF00425: chorismate
           binding enzyme; contains TIGRfam profile TIGR00543:
           isochorismate synthases; identical to cDNA isochorismate
           synthase 1 precursor (ICS1) nuclear gene for plastid
           product GI:17223086
          Length = 569

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 240 EQHDESLFADPFGMFGGENHMAIMGPR 320
           E  D  ++A P G FGGE     +G R
Sbjct: 489 ESFDRGMYAGPIGFFGGEESEFAVGIR 515


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,634,370
Number of Sequences: 28952
Number of extensions: 226836
Number of successful extensions: 530
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)