Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00408
         (551 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    26   0.19 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   1.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   4.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.2  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 1   RHERNIRLEPPLTSPQLLMLEKQF 72
           +H+ N +   P T+ QLL LEK+F
Sbjct: 111 KHKPNRKPRTPFTTQQLLALEKKF 134


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 333 FKTILIMTYTVTAPNLTSYQI*IATKTSLMITK*IAMM 446
           F  I   TY + A +LT+Y + I   T+L IT+ ++++
Sbjct: 39  FYKIYKYTYNIVAVSLTAYMVYIT--TNLRITQKLSIV 74


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 451  GIIIAIYFVIIREVFVAIQI 392
            G+I AIY +I+  VFV + +
Sbjct: 947  GLISAIYGLIMMAVFVGVML 966


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 451  GIIIAIYFVIIREVFVAIQI 392
            G+I AIY +I+  VFV + +
Sbjct: 947  GLISAIYGLIMMAVFVGVML 966


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
          transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 19 RLEPPLTSPQLLMLEKQF 72
          RL    T+ QLL LEK+F
Sbjct: 6  RLRTAYTNTQLLELEKEF 23


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 19  RLEPPLTSPQLLMLEKQF 72
           RL    T+ QLL LEK+F
Sbjct: 137 RLRTAYTNTQLLELEKEF 154


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 511 LGECGLRR 488
           LGECG+RR
Sbjct: 413 LGECGIRR 420


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 511 LGECGLRR 488
           LGECG+RR
Sbjct: 413 LGECGIRR 420


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,983
Number of Sequences: 336
Number of extensions: 1766
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)