Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00408
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 28 0.80
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 28 0.80
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.8
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 2.4
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 2.4
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 26 4.2
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 25 5.6
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.8
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 28.3 bits (60), Expect = 0.80
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 33 TYVTTITDARETVLPITFRGKAILTTIVDPTTNVITAT 146
TYVTT+ ET+L T+ LTTI +N I+ T
Sbjct: 416 TYVTTL---TETILTTTYDSHTFLTTITPSPSNSISYT 450
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 28.3 bits (60), Expect = 0.80
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTT--IVDPTTNVITATEFVTETVITTPT 182
TR V + ++L + I+ T + + IT+T FVTET TPT
Sbjct: 29 TRLDQKVQLFLNEHSSILNAVYETTTIVYTEPLHTSVSETITSTSFVTETTTVTPT 84
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
T T TT + T P T + TT+V PTT+V T T T + T T
Sbjct: 92 TTTTVPPTTSLNTTTTTAPPTTHVNST-TTVVPPTTHVNTTTVVPPTTHVNTTT 144
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.8
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +3
Query: 27 ATTYVTTITDARETVLPITFRGKAI-----LTTIVDPTTNVITATEFV-TETVITTPTA 185
ATT TT T T P+T I +T+ TTN T+T + T T IT+P +
Sbjct: 551 ATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNS 609
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 2.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 27 ATTYVTTITDARET-VLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
+T TT +A T + T A +TT V+ TT +T TV+TT T
Sbjct: 243 STIRTTTPMEAMITPTVETTTLPTAAMTTPVEETTTTPMVETMITPTVVTTTT 295
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 30 TTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVIT 173
TT T T + + + G TT+V T +TATE TV T
Sbjct: 799 TTVTTGYTGTETSTVTVIPTGTTGTTTVVIQTPTTVTATETDIVTVTT 846
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 18 KTRATTYVTTITDARETVLPITFRGKAI-LTTIVDPTTNVITATEFVTETVIT 173
+T T T T + + +T G + TT+V T +TATE TV T
Sbjct: 838 ETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTT 890
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 18 KTRATTYVTTITDARETVLPITFRGKAI-LTTIVDPTTNVITATEFVTETVIT 173
+T T T T + + +T G + TT+V T +TATE TV T
Sbjct: 882 ETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTT 934
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 18 KTRATTYVTTITDARETVLPITFRGKAI-LTTIVDPTTNVITATEFVTETVIT 173
+T T T T + + +T G + TT+V T +TATE TV T
Sbjct: 926 ETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTT 978
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 18 KTRATTYVTTITDARETVLPITFRGKAI-LTTIVDPTTNVITATEFVTETVIT 173
+T T T T + + +T G + TT+V T +TATE TV T
Sbjct: 970 ETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTT 1022
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 18 KTRATTYVTTITDARETVLPITFRGKAI-LTTIVDPTTNVITATEFVTETVIT 173
+T T T T + + +T G + TT+V T +TATE TV T
Sbjct: 1014 ETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTT 1066
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 18 KTRATTYVTTITDARETVLPITFRGKAI-LTTIVDPTTNVITATEFVTETVIT 173
+T T T T + + +T G + TT+V T +TATE TV T
Sbjct: 1058 ETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTT 1110
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = +3
Query: 471 VRSKQKRL-SPHSPSKPV 521
++SK KR SPHSP KPV
Sbjct: 141 LQSKDKRSQSPHSPKKPV 158
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 172 VITVSVTNSVAVITFVVGSTIVVK-IALPLNVIG 74
++T+SV + I ++ ST+ I LP+N++G
Sbjct: 304 IVTLSVCGILKEIITIIASTLFYHDILLPINIVG 337
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 18 KTRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTP 179
KT + T V +P + +A T T + + T+FVTET+I +P
Sbjct: 107 KTASNTSVAGSDSVSRDKIPFSASSRASSTK---STLSSVKETDFVTETLILSP 157
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.6 bits (51), Expect = 9.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 27 ATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
++T +T+ T A T PIT +T + +T V T+T + TV+ + T
Sbjct: 1016 SSTAITSST-ALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSST 1066
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,497
Number of Sequences: 5004
Number of extensions: 28878
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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