Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00408
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0421 + 23331702-23331723,23332161-23332197,23333397-233335...    29   1.9  
05_03_0258 - 11153709-11156090                                         29   1.9  

>11_06_0421 +
           23331702-23331723,23332161-23332197,23333397-23333533,
           23333675-23334241,23335068-23335777,23335915-23336102,
           23336489-23336918
          Length = 696

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 211 EFNCGDGPKAVGVVITVSVTNSVAVITF 128
           EF   +GP   G+++ VSV  S+A+  F
Sbjct: 74  EFGLNNGPSIDGIILAVSVFGSIAITVF 101


>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -1

Query: 179 GSRNHSFR---NEFSSGYNVCRGIYNCSQNCLASECNWQNCFSSIS 51
           GSR ++F+      SSG+  C   YN   N L+ + +W    S +S
Sbjct: 475 GSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVS 520


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,548,836
Number of Sequences: 37544
Number of extensions: 186349
Number of successful extensions: 455
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)