Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00408
(551 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.038
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.089
SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6) 34 0.089
SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024) 33 0.12
SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47) 33 0.12
SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92) 33 0.12
SB_422| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_40768| Best HMM Match : TM_helix (HMM E-Value=7.7) 31 0.63
SB_39796| Best HMM Match : VWA (HMM E-Value=0) 31 0.63
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_37759| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0) 29 1.9
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 29 3.3
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06) 29 3.3
SB_54074| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_54807| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 5.8
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033) 28 5.8
SB_7006| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
>SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 35.1 bits (77), Expect = 0.038
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPTA 185
T +TT +TT T T IT +T + TT +IT T +T T+ITT TA
Sbjct: 23 TLSTTIITTTTTITTTTTTIT----TTITPTITTTTTIITTT--ITTTIITTTTA 71
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 30 TTYVTTITDARETVLPITFRGKAILTTIVDPTTNV---ITATEFVTETVITT 176
T T IT+A T++ ++ TTI TT + IT T T T+ITT
Sbjct: 8 TVTTTIITNATTTIITLSTTIITTTTTITTTTTTITTTITPTITTTTTIITT 59
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITT 176
T T TTI T++ T TTI T IT T + T ITT
Sbjct: 12 TIITNATTTIITLSTTIITTTTTITTTTTTITTTITPTITTTTTIITTTITT 63
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 33.9 bits (74), Expect = 0.089
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPT-TNVITATEFVTETVITTPTA 185
T ATT T+T A + +T +T V T T +TAT VT T T TA
Sbjct: 232 TAATTVTATVTAATTVTVTVTATAATTVTVTVTATVTATVTATVTVTATTTVTVTA 287
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILT---TIVDPTTNVITATEFVTETVITTPTA 185
T ATT T+T T + +T T T+ T +T T T TVI T TA
Sbjct: 242 TAATTVTVTVTATAATTVTVTVTATVTATVTATVTVTATTTVTVTATATVTVIVTVTA 299
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
T T T+T + +T + A T T+ +TAT VT TV T T
Sbjct: 615 TATATVTVTVTATVTVTVIVTVKAAAATATATVTVTSTVTATATVTATVTATAT 668
Score = 31.1 bits (67), Expect = 0.63
Identities = 21/53 (39%), Positives = 24/53 (45%)
Frame = +3
Query: 27 ATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPTA 185
ATT VT A TV+ +T +T V T TAT T T TT TA
Sbjct: 279 ATTTVTVTATATVTVI-VTVTATLAVTVTVTETAAAATATVTATVTTTTTATA 330
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
T T + T+T + +T A T+ T TAT T T T T
Sbjct: 288 TATVTVIVTVTATLAVTVTVTETAAAATATVTATVTTTTTATATATTTATATAT 341
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPTA 185
T T T+T + +T +T IV TAT VT T T TA
Sbjct: 603 TATVTATVTVTATATATVTVTVTATVTVTVIVTVKAAAATATATVTVTSTVTATA 657
>SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)
Length = 269
Score = 33.9 bits (74), Expect = 0.089
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPT-TNVITATEFVTETVITTPTA 185
T ATT T+T A + +T +T V T T +TAT VT T T TA
Sbjct: 209 TAATTVTATVTAATTVTVTVTATAATTVTVTVTATVTATVTATVTVTATTTVTVTA 264
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/54 (38%), Positives = 25/54 (46%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
T ATT T+T T + +T A +T V T V TAT VT T T T
Sbjct: 219 TAATTVTVTVTATAATTVTVTV--TATVTATVTATVTV-TATTTVTVTATATVT 269
>SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024)
Length = 249
Score = 33.5 bits (73), Expect = 0.12
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 30 TTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITAT--EFVTETVITTPT 182
TT TTIT T+ IT A +TT + TT ITAT +T T+ TT T
Sbjct: 154 TTTTTTIT-ITATITTITTTITATITTTISTTTPFITATISTTITTTITTTTT 205
Score = 31.9 bits (69), Expect = 0.36
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 27 ATTYVTTITDARETVLPI-TFRGKAILTTIVDPTTNVITATEFVTETVITTPTA 185
ATT TTIT T I T TT + TT ITA ++ T TT TA
Sbjct: 92 ATTTTTTITTTTTTTTTISTTISTTTTTTTISTTTTTITAV-IISTTTTTTSTA 144
>SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)
Length = 1345
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
T TT TI+ T + T I+TTI+ T +IT T + +I T T
Sbjct: 486 TTTTTSSPTISINTTTTVTTTIITTTIITTIIITTATIITTTTIIINVIIATTT 539
>SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92)
Length = 425
Score = 33.5 bits (73), Expect = 0.12
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +3
Query: 9 AEYKTRAT-TYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTET----VIT 173
AE T T T VTT T A E + T + +TTI T TATE T T V T
Sbjct: 211 AEVTTTTTATEVTTTTTAAEVTMTTT-AAEVTMTTIATEVTMTTTATEVTTTTTAAEVAT 269
Query: 174 TPTA 185
T TA
Sbjct: 270 TTTA 273
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/58 (31%), Positives = 22/58 (37%)
Frame = +3
Query: 9 AEYKTRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
AE T T T+T + V T + +TT T TATE T T T
Sbjct: 6 AEVTTTTTATEVTMTTTAKEVTTTTTAAEVTMTTTAAEVTTTTTATEVTTTTTAAEVT 63
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/58 (31%), Positives = 22/58 (37%)
Frame = +3
Query: 9 AEYKTRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
AE T T T+T + V T + +TT T TATE T T T
Sbjct: 283 AEVTTTTTATEVTMTTTAKEVTTTTTAAEVTMTTTAAEVTTTTTATEVTTTTTAAEVT 340
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
T T VT T A+E + T + TT + TT TATE T T T
Sbjct: 180 TTTATEVTMTTTAKEVTMTTTAAEVTMTTTAAEVTTTT-TATEVTTTTTAAEVT 232
Score = 28.7 bits (61), Expect = 3.3
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTET----VITTPTA 185
T T VTT T A E V T + +TT T TATE T V TT TA
Sbjct: 252 TTTATEVTTTTTAAE-VATTTTAAEVTMTTTAAEVTTTTTATEVTMTTTAKEVTTTTTA 309
>SB_422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 33.5 bits (73), Expect = 0.12
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 30 TTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITAT--EFVTETVITTPT 182
TT TTIT T+ IT A +TT + TT ITAT +T T+ TT T
Sbjct: 13 TTTTTTIT-ITATITTITTTITATITTTISTTTPFITATISTTITTTITTTTT 64
>SB_40768| Best HMM Match : TM_helix (HMM E-Value=7.7)
Length = 122
Score = 31.1 bits (67), Expect = 0.63
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 30 TTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
TT +TTIT T++ T I T I+ T +IT + T+ITT T
Sbjct: 31 TTMITTITITTTTIIT-TMITTIITTVIIIITITIITIITTIITTIITTIT 80
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 39 VTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITT 176
+TTIT + IT ++TTI T +IT T T+ITT
Sbjct: 2 ITTITITITMITTITVIITTMITTITVIITTMITTITITTTTIITT 47
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRG--KAILTTIVDPTTNVITATEFVTETVITTPT 182
T TT +TTI ++ IT I+TTI+ T + T + T+ITT T
Sbjct: 43 TIITTMITTIITTVIIIITITIITIITTIITTIITTITIITTIITTIITTIITTIT 98
>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
Length = 2119
Score = 31.1 bits (67), Expect = 0.63
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITT 176
T TT T+T T T + TT + T V TAT+ TET ++T
Sbjct: 1753 TLTTTSTGTLTSTHHTTHTSTETSTHV-TTATETATEVTTATQVTTETAVST 1803
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +3
Query: 27 ATTYVT-TITDARETVLPITFRGKAILT-TIVDPTTNVITATEFVTETVITTPTA 185
AT Y T T+T L T T T TT TATE T T +TT TA
Sbjct: 1746 ATAYTTATLTTTSTGTLTSTHHTTHTSTETSTHVTTATETATEVTTATQVTTETA 1800
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 30 TTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITT 176
T TTI T + T I+TT + T T T +T T+ITT
Sbjct: 1065 TNITTTINTTINTTIITTTITTTIITTTITTTIITTTITTTITTTIITT 1113
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +3
Query: 30 TTYVTTI--TDARETVLPITFRGKAILTTIVDP-TTNVITATEFVTETVITT 176
TT TTI T T++ T I TTI TT +IT T VT T+ITT
Sbjct: 1073 TTINTTIITTTITTTIITTTITTTIITTTITTTITTTIITTT--VTTTIITT 1122
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 21 TRATTYVTT--ITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITT 176
T TT +TT IT T + T I TTI+ T T +T T+ITT
Sbjct: 1078 TIITTTITTTIITTTITTTIITTTITTTITTTIITTTVTTTIITTTITTTIITT 1131
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = +3
Query: 30 TTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITT 176
TT + TIT+ T+ T I TTI TT +IT T +T T+ITT
Sbjct: 1058 TTTIITITNITTTI-NTTINTTIITTTI---TTTIITTT--ITTTIITT 1100
>SB_37759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVIT---ATEFVTETVITT 176
T ATT + T T T++ T ++TT + TT VIT T VT T++TT
Sbjct: 127 TLATTTLATTTLVTTTLVITTLVTTTLVTTTLVITTLVITTLVTTTLVTTTLVTT 181
>SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 689
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPTA 185
T T VTT A T + TT T + TAT VT T T TA
Sbjct: 428 TTTTVTVTTTATATATATATATATATVTTTATATVTVIATATATVTVTATATVTA 482
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/54 (40%), Positives = 23/54 (42%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
T A T T A T + IT I TTI TT IT T T ITT T
Sbjct: 256 TIAIAIAITTTTATPTAITIT-----ITTTITIITTITITTTTITTAITITTAT 304
>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
Length = 587
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 15 YKTRATTYVTTITDARETVLPITFRGKAILTTIVDPTTN-VITATEFVTETVITTPT 182
Y T TT +TT T+ T + TTI + TT IT T + T TV TT T
Sbjct: 526 YTTTVTTTITTNYTTIVTITITTNYTTTVTTTITNYTTTFTITITNYTT-TVNTTIT 581
Score = 27.9 bits (59), Expect = 5.8
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Frame = +3
Query: 21 TRATTYVTTITDA---RETVLPITFRGKAILTTIVDPTTN-----VITATEFVTETVITT 176
T T Y TT+T T++PIT T TTN IT T T TV TT
Sbjct: 498 TTITNYTTTVTFTITNYTTIVPITITTNYTTTVTTTITTNYTTIVTITITTNYTTTVTTT 557
Query: 177 PT 182
T
Sbjct: 558 IT 559
>SB_54074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
T T +TT T T + I I TTI+ TT +I T + T I T T
Sbjct: 751 TTNTIIITTTTIITTTTIIIIIIIIIITTTIITTTTIIIIITTTIILTTIITTT 804
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +3
Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATE---FVTETVITT 176
T TT +TT T T IT I+ I+ TT +IT T +T T+I T
Sbjct: 744 TTITTIITTNTIIITTTTIITTTTIIIIIIIIIITTTIITTTTIIIIITTTIILT 798
>SB_54807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 6 RAEYKTRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITT 176
R + K+ T IT T++ T I TTI T +IT T + T+ITT
Sbjct: 68 RKKVKSHLMTTTIIITTITTTIIITT-----ITTTIATTITIIITTTTTIITTIITT 119
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 206 QLRRWTQSSGSRNHSFR---NEFSSGYNVCRGIYNCSQNCLASECNWQNC 66
+LR + S RN FR N+ +NVC G+Y+C+ + E +++C
Sbjct: 3277 ELRLLCRYSICRNSHFRCDNNKCIPKWNVCDGVYHCTDK--SDEAPYRSC 3324
>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +3
Query: 36 YVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
Y TT T A T +TT TT T T T T TT T
Sbjct: 21 YATTKTTAATIKTKTTIIAITAITTTTTTTTTTTTTTTTTTTTTTTTTT 69
>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
Length = 382
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +3
Query: 36 YVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
Y TT T A T +TT TT T T T T TT T
Sbjct: 143 YATTKTTAATIKTKTTIIAITAITTTTTTTTTTTTTTTTTTTTTTTTTT 191
>SB_7006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 175 VVITVSVTNSVAVITFVVGSTIVVKIALPLNVI 77
++IT ++T + A+I F S + LPLN++
Sbjct: 84 IIITTAITITTAIIIFTASSLPWLSPPLPLNIV 116
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,598,994
Number of Sequences: 59808
Number of extensions: 234084
Number of successful extensions: 4015
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3999
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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