Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00408
         (551 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF007193-1|AAC02271.1|  441|Homo sapiens mucin protein.                34   0.29 
AF007197-1|AAB84381.1|  335|Homo sapiens mucin protein.                33   0.88 

>AF007193-1|AAC02271.1|  441|Homo sapiens mucin protein.
          Length = 441

 Score = 34.3 bits (75), Expect = 0.29
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 21  TRATTYVTTITDARETVLPITFRGKAILTTIVD--PTTNVITATEFVT 158
           T  TTY T +T    TV  +     ++LTT+    PTTN++T T  +T
Sbjct: 325 TTRTTYSTNMTGTLSTVTSLRPTSSSLLTTVTATVPTTNLVTTTTKIT 372


>AF007197-1|AAB84381.1|  335|Homo sapiens mucin protein.
          Length = 335

 Score = 32.7 bits (71), Expect = 0.88
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 21  TRATTYVTTITDARETVLPITFRGKAILTTIVD--PTTNVITAT 146
           T  TTY T +T    TV  +     ++LTT+    PTTN++T T
Sbjct: 291 TTRTTYSTNMTGTLSTVTSLRPTSSSLLTTVTATVPTTNLVTTT 334


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,531,887
Number of Sequences: 237096
Number of extensions: 980488
Number of successful extensions: 2259
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2259
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5477474182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)